UHGV-2029805

Genome information

vOTU vOTU-020335

Genome length 32,206 bps

CDS count 55

Completeness 79.58% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-2029805
vOTU ID	vOTU-020335
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029086\|Ga0169215_100362
BioSample	SAMEA2579949
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.73
Jumbo phage	No

Genome content
Genome length	32,206 bps
GC content	40.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	95.71%
Average CDS length	566.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2029805_1	UniRef90	UniRef90_UPI000834154D	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-2029805_1	eggNOG-mapper	1122173.AXVL01000004_gene820	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-2029805_1	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-2029805_2	PHROG	phrog_1281	NA	unknown function
UHGV-2029805_2	UniRef90	UniRef90_UPI001C38FF11	NA	NA
UHGV-2029805_2	eggNOG-mapper	1227268.HMPREF1552_01576	Phage-associated protein	NA
UHGV-2029805_2	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-2029805_2	COG	COG3600	NA	NA
UHGV-2029805_2	Structural annotation	PF13274, COG3600	NA	NA
UHGV-2029805_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2029805_3	PHROG	phrog_2742	endolysin	lysis
UHGV-2029805_3	UniRef90	UniRef90_H1BAK9	MurNAc-LAA domain-containing protein	NA
UHGV-2029805_3	eggNOG-mapper	999413.HMPREF1094_01993	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2029805_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2029805_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2029805_3	Structural annotation	PF01520, PF08460, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-2029805_4	PHROG	phrog_37604	NA	unknown function
UHGV-2029805_4	eggNOG-mapper	1123075.AUDP01000020_gene1531	NA	NA
UHGV-2029805_5	PHROG	phrog_443	holin	lysis
UHGV-2029805_5	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-2029805_5	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-2029805_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2029805_5	Structural annotation	PF16945	NA	NA
UHGV-2029805_8	Structural annotation	PF09458, NF012201	NA	NA
UHGV-2029805_10	PHROG	phrog_134	NA	unknown function
UHGV-2029805_10	UniRef90	UniRef90_A0A223MJ98	XkdX family protein	NA
UHGV-2029805_10	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2029805_10	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-2029805_11	PHROG	phrog_24451	NA	unknown function
UHGV-2029805_11	UniRef90	UniRef90_A0A3P6KYQ0	NA	NA
UHGV-2029805_11	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-2029805_12	PHROG	phrog_4492	tail fiber protein	tail
UHGV-2029805_12	eggNOG-mapper	908340.HMPREF9406_2566	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2029805_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2029805_13	PHROG	phrog_5555	tail protein	tail
UHGV-2029805_13	UniRef90	UniRef90_UPI001C394D99	phage tail protein	NA
UHGV-2029805_13	eggNOG-mapper	999413.HMPREF1094_00205	NA	NA
UHGV-2029805_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2029805_13	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-2029805_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2029805_13	COG	COG4926	Phage-related protein	NA
UHGV-2029805_13	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-2029805_14	UniRef90	UniRef90_UPI00085CD9AD	phage tail family protein	NA
UHGV-2029805_14	eggNOG-mapper	1280689.AUJC01000007_gene3307	phage tail	NA
UHGV-2029805_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-2029805_14	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-2029805_15	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2029805_15	UniRef90	UniRef90_UPI001C38BAFE	tape measure protein	NA
UHGV-2029805_15	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-2029805_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2029805_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2029805_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2029805_15	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2029805_16	PHROG	phrog_706	NA	unknown function
UHGV-2029805_16	UniRef90	UniRef90_UPI001E5E5ED8	bacteriophage Gp15 family protein	NA
UHGV-2029805_16	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-2029805_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2029805_16	Structural annotation	PF06854	NA	NA
UHGV-2029805_17	Structural annotation	PF10666	NA	NA
UHGV-2029805_18	PHROG	phrog_3099	NA	unknown function
UHGV-2029805_18	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-2029805_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2029805_19	UniRef90	UniRef90_UPI001C39115E	ABC transporter permease	NA
UHGV-2029805_19	Structural annotation	PF16807	NA	NA
UHGV-2029805_20	UniRef90	UniRef90_UPI001C388690	minor capsid protein	NA
UHGV-2029805_20	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-2029805_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2029805_20	Structural annotation	PF11114	NA	NA
UHGV-2029805_21	UniRef90	UniRef90_UPI001E2BB5D0	minor capsid protein	NA
UHGV-2029805_21	Structural annotation	PF20536	NA	NA
UHGV-2029805_23	PHROG	phrog_212	major head protein	head and packaging
UHGV-2029805_23	UniRef90	UniRef90_UPI001E4A818F	phage capsid protein	NA
UHGV-2029805_23	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-2029805_23	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2029805_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2029805_24	UniRef90	UniRef90_UPI001D0A686C	phage scaffolding protein	NA
UHGV-2029805_24	eggNOG-mapper	1232449.BAHV02000010_gene2713	NA	NA
UHGV-2029805_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2029805_24	Structural annotation	PF06810	NA	NA
UHGV-2029805_25	eggNOG-mapper	999413.HMPREF1094_00217	NA	NA
UHGV-2029805_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2029805_26	UniRef90	UniRef90_UPI001EDF7588	phage minor capsid protein	NA
UHGV-2029805_26	eggNOG-mapper	552396.HMPREF0863_00280	Phage minor capsid protein 2	NA
UHGV-2029805_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2029805_26	COG	COG2369	NA	NA
UHGV-2029805_26	Structural annotation	PF06152	NA	NA
UHGV-2029805_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-2029805_27	UniRef90	UniRef90_UPI001430A874	phage portal protein	NA
UHGV-2029805_27	eggNOG-mapper	552396.HMPREF0863_00281	phage minor capsid protein	NA
UHGV-2029805_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2029805_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2029805_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2029805_28	UniRef90	UniRef90_U5FBJ7	PBSX family phage terminase, large subunit	NA
UHGV-2029805_28	eggNOG-mapper	552396.HMPREF0863_00282	DNA packaging	NA
UHGV-2029805_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2029805_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2029805_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2029805_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2029805_29	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2029805_29	UniRef90	UniRef90_UPI001F065150	terminase small subunit	NA
UHGV-2029805_29	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-2029805_29	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2029805_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2029805_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2029805_29	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2029805_31	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2029805_31	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-2029805_31	UniRef90	UniRef90_G1VRZ3	N6_Mtase domain-containing protein	NA
UHGV-2029805_31	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-2029805_31	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-2029805_31	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2029805_31	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2029805_31	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-2029805_32	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-2029805_35	eggNOG-mapper	428127.EUBDOL_01518	NA	NA
UHGV-2029805_37	PHROG	phrog_17842	NA	unknown function
UHGV-2029805_39	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2029805_39	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2029805_39	UniRef90	UniRef90_H1B475	SF4 helicase domain-containing protein	NA
UHGV-2029805_39	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-2029805_39	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2029805_39	COG	COG0305	Replicative DNA helicase	NA
UHGV-2029805_39	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2029805_40	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2029805_40	UniRef90	UniRef90_H1BHS1	Inhibitor_G39P domain-containing protein	NA
UHGV-2029805_40	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2029805_41	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2029805_41	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-2029805_41	eggNOG-mapper	428127.EUBDOL_01512	DnaD domain protein	NA
UHGV-2029805_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2029805_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2029805_49	eggNOG-mapper	1235793.C809_00543	NA	NA
UHGV-2029805_52	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2029805_52	UniRef90	UniRef90_H1BHQ8	Bro-N domain-containing protein	NA
UHGV-2029805_52	eggNOG-mapper	1121342.AUCO01000004_gene621	Phage antirepressor protein	NA
UHGV-2029805_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2029805_52	COG	COG3617	Prophage antirepressor	NA
UHGV-2029805_52	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-2029805_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2029805_53	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2029805_53	UniRef90	UniRef90_UPI000E49576D	phage antirepressor KilAC domain-containing protein	NA
UHGV-2029805_53	eggNOG-mapper	1123263.AUKY01000076_gene1778	Phage antirepressor protein	NA
UHGV-2029805_53	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2029805_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2029805_53	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2029805_53	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2029805_55	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2029805_55	UniRef90	UniRef90_A0A898FVR5	Toxin Bro	NA
UHGV-2029805_55	eggNOG-mapper	1211844.CBLM010000016_gene1514	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2029805_55	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2029805_55	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2029805_55	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2029805_55	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA