UHGV-2029818

Genome information

vOTU vOTU-019899

Genome length 21,318 bps

CDS count 27

Completeness 50.68% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-2029818
vOTU ID	vOTU-019899
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029079\|Ga0169227_100272
BioSample	SAMEA2579961
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.81
Jumbo phage	No

Genome content
Genome length	21,318 bps
GC content	48.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	94.60%
Average CDS length	748.56 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2029818_2	PHROG	phrog_199	holin	lysis
UHGV-2029818_2	UniRef90	UniRef90_R0CKA9	Toxin secretion/phage lysis holin	NA
UHGV-2029818_2	eggNOG-mapper	1121333.JMLH01000047_gene1005	Bacteriophage holin family	NA
UHGV-2029818_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2029818_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2029818_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2029818_3	Structural annotation	PF21253, NF038128, COG5156	NA	NA
UHGV-2029818_4	PHROG	phrog_19111	NA	unknown function
UHGV-2029818_4	eggNOG-mapper	411902.CLOBOL_00121	nuclear chromosome segregation	NA
UHGV-2029818_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2029818_5	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-2029818_6	PHROG	phrog_18725	NA	unknown function
UHGV-2029818_6	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-2029818_7	PHROG	phrog_13879	NA	unknown function
UHGV-2029818_7	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-2029818_7	Structural annotation	PF14594, PF21114, MF_00813, NF033848, TIGR02961, COG4379, COG4266	NA	NA
UHGV-2029818_8	PHROG	phrog_1194	NA	unknown function
UHGV-2029818_8	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-2029818_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2029818_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2029818_9	UniRef90	UniRef90_A0A1H7MQ92	Phage-related protein	NA
UHGV-2029818_9	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-2029818_9	COG	COG5283	Phage-related tail protein	NA
UHGV-2029818_10	PHROG	phrog_706	NA	unknown function
UHGV-2029818_10	UniRef90	UniRef90_A0A0F0CE18	Bacteriophage Gp15 protein	NA
UHGV-2029818_10	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-2029818_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2029818_10	Structural annotation	PF06854	NA	NA
UHGV-2029818_11	PHROG	phrog_11299	NA	unknown function
UHGV-2029818_11	eggNOG-mapper	411902.CLOBOL_00128	NA	NA
UHGV-2029818_11	Structural annotation	PF10666	NA	NA
UHGV-2029818_12	PHROG	phrog_3099	NA	unknown function
UHGV-2029818_12	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-2029818_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2029818_13	PHROG	phrog_3266	tail completion	connector
UHGV-2029818_13	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-2029818_13	Structural annotation	PF20765	NA	NA
UHGV-2029818_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2029818_14	UniRef90	UniRef90_UPI00189CE0C6	minor capsid protein	NA
UHGV-2029818_14	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-2029818_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2029818_14	Structural annotation	PF11114	NA	NA
UHGV-2029818_15	PHROG	phrog_3366	NA	unknown function
UHGV-2029818_15	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-2029818_15	Pfam	PF20536	NA	DUF6751
UHGV-2029818_15	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2029818_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2029818_16	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-2029818_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-2029818_17	UniRef90	UniRef90_UPI000E438149	phage major capsid protein	NA
UHGV-2029818_17	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-2029818_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2029818_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2029818_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2029818_17	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2029818_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2029818_18	UniRef90	UniRef90_C0CSR8	Phage minor structural protein GP20	NA
UHGV-2029818_18	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-2029818_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2029818_18	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2029818_19	PHROG	phrog_419	NA	unknown function
UHGV-2029818_19	UniRef90	UniRef90_A0A0A8WEQ1	Phage-related protein	NA
UHGV-2029818_19	eggNOG-mapper	797515.HMPREF9103_00825	NA	NA
UHGV-2029818_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2029818_20	UniRef90	UniRef90_A0A3E2UZQ7	Minor capsid protein	NA
UHGV-2029818_20	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-2029818_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2029818_20	COG	COG2369	NA	NA
UHGV-2029818_20	Structural annotation	PF06152	NA	NA
UHGV-2029818_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-2029818_22	UniRef90	UniRef90_UPI0011062C56	phage portal protein	NA
UHGV-2029818_22	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-2029818_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2029818_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2029818_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2029818_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2029818_23	UniRef90	UniRef90_A0A413B195	PBSX family phage terminase large subunit	NA
UHGV-2029818_23	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-2029818_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-2029818_23	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2029818_24	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2029818_24	UniRef90	UniRef90_R0CLX0	Phage terminase small subunit	NA
UHGV-2029818_24	eggNOG-mapper	411902.CLOBOL_00140	DNA packaging	NA
UHGV-2029818_24	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2029818_24	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2029818_24	COG	COG5484	NA	NA
UHGV-2029818_24	Structural annotation	NF040601, COG5484	NA	NA
UHGV-2029818_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2029818_26	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-2029818_26	eggNOG-mapper	411902.CLOBOL_00148	NA	NA
UHGV-2029818_26	Structural annotation	PF02996	NA	NA
UHGV-2029818_27	PHROG	phrog_16126	NA	unknown function
UHGV-2029818_27	eggNOG-mapper	411902.CLOBOL_07208	NA	NA