UHGV-2030142

Genome information

Genome length 27,890 bps

CDS count 36

Completeness 69.44% (medium-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-2030142
vOTU ID	vOTU-023626
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029112\|Ga0168820_100486\|provirus_135_28024
BioSample	SAMEA2737801
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.95
Jumbo phage	No

Genome content
Genome length	27,890 bps
GC content	28.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	85.91%
Average CDS length	666.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2030142_2	UniRef90	UniRef90_A0A1C6HH63	NA	NA
UHGV-2030142_2	eggNOG-mapper	536232.CLM_2073	NA	NA
UHGV-2030142_2	Pfam	PF18903	NA	DUF5659
UHGV-2030142_3	PHROG	phrog_8308	NA	unknown function
UHGV-2030142_3	UniRef90	UniRef90_A0A1C6HFP1	RNA dependent RNA polymerase	NA
UHGV-2030142_3	eggNOG-mapper	545697.HMPREF0216_01759	NA	NA
UHGV-2030142_3	Pfam	PF05183	RNA dependent RNA polymerase	RdRP
UHGV-2030142_3	Structural annotation	PF05183	NA	NA
UHGV-2030142_5	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2030142_5	UniRef90	UniRef90_UPI001C1115DA	DEAD/DEAH box helicase family protein	NA
UHGV-2030142_5	eggNOG-mapper	545697.HMPREF0216_01757	Type III restriction enzyme, res subunit	NA
UHGV-2030142_5	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2030142_6	UniRef90	UniRef90_A0A1C6F615	SAP domain-containing protein	NA
UHGV-2030142_12	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-2030142_12	UniRef90	UniRef90_A0A7G5NTL4	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-2030142_12	eggNOG-mapper	1345695.CLSA_c30000	NA	NA
UHGV-2030142_12	Structural annotation	PF13022, COG3677	NA	NA
UHGV-2030142_14	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-2030142_14	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-2030142_14	UniRef90	UniRef90_UPI0006C3AFF3	recombinase family protein	NA
UHGV-2030142_14	eggNOG-mapper	641107.CDLVIII_3183	Resolvase, N terminal domain	NA
UHGV-2030142_14	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2030142_14	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2030142_14	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-2030142_15	PHROG	phrog_10400	NA	unknown function
UHGV-2030142_15	UniRef90	UniRef90_A5MYM9	Phage-related protein	NA
UHGV-2030142_15	eggNOG-mapper	1567014.A0A0A7RTU6_9VIRU	NA	NA
UHGV-2030142_16	PHROG	phrog_3202	NA	unknown function
UHGV-2030142_16	UniRef90	UniRef90_UPI00189848F6	YjzC family protein	NA
UHGV-2030142_16	eggNOG-mapper	445974.CLORAM_02964	YjzC-like protein	NA
UHGV-2030142_16	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-2030142_16	Structural annotation	PF14168	NA	NA
UHGV-2030142_17	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2030142_17	UniRef90	UniRef90_UPI0006C4E0BD	terminase	NA
UHGV-2030142_17	eggNOG-mapper	1443125.Z962_07895	TIGRFAM Phage	NA
UHGV-2030142_17	COG	COG5362	Phage terminase large subunit	NA
UHGV-2030142_17	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-2030142_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-2030142_18	UniRef90	UniRef90_UPI0006C08419	phage portal protein	NA
UHGV-2030142_18	eggNOG-mapper	1415774.U728_1093	portal protein, SPP1 Gp6-like	NA
UHGV-2030142_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2030142_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2030142_19	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2030142_19	UniRef90	UniRef90_UPI0006C641A8	minor capsid protein	NA
UHGV-2030142_19	eggNOG-mapper	1499683.CCFF01000005_gene66	Phage Mu protein F like protein	NA
UHGV-2030142_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2030142_19	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2030142_19	COG	COG2369	NA	NA
UHGV-2030142_19	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2030142_20	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2030142_20	UniRef90	UniRef90_UPI0006C20523	NA	NA
UHGV-2030142_20	eggNOG-mapper	1499683.CCFF01000017_gene2146	NA	NA
UHGV-2030142_20	Pfam	PF14265	NA	DUF4355
UHGV-2030142_20	Structural annotation	PF14265	NA	NA
UHGV-2030142_21	PHROG	phrog_267	major head protein	head and packaging
UHGV-2030142_21	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-2030142_21	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-2030142_21	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2030142_23	eggNOG-mapper	1321778.HMPREF1982_03552	NA	NA
UHGV-2030142_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2030142_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2030142_24	UniRef90	UniRef90_UPI0006BFDA1B	HK97 gp10 family phage protein	NA
UHGV-2030142_24	eggNOG-mapper	1229751.R9QMA5_9CAUD	exonuclease activity	NA
UHGV-2030142_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2030142_24	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-2030142_25	Structural annotation	PF20765	NA	NA
UHGV-2030142_26	PHROG	phrog_885	major tail protein	tail
UHGV-2030142_26	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2030142_27	PHROG	phrog_1021	NA	unknown function
UHGV-2030142_29	PHROG	phrog_17020	NA	unknown function
UHGV-2030142_29	UniRef90	UniRef90_UPI0006C020C3	tape measure protein	NA
UHGV-2030142_29	eggNOG-mapper	1499683.CCFF01000005_gene78	phage tail tape measure protein	NA
UHGV-2030142_29	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2030142_29	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2030142_29	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2030142_29	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2030142_30	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2030142_30	UniRef90	UniRef90_UPI0006C51AB9	phage tail family protein	NA
UHGV-2030142_30	eggNOG-mapper	1499683.CCFF01000017_gene2156	tail component	NA
UHGV-2030142_30	COG	COG4722	Phage-related protein YomH	NA
UHGV-2030142_30	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2030142_31	UniRef90	UniRef90_A0A1C6CWB5	Phage tail protein	NA
UHGV-2030142_32	PHROG	phrog_7043	tail protein	tail
UHGV-2030142_32	UniRef90	UniRef90_UPI000AB4EEF7	phage tail protein	NA
UHGV-2030142_32	eggNOG-mapper	1499683.CCFF01000017_gene2158	Phage minor structural protein	NA
UHGV-2030142_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2030142_32	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2030142_32	COG	COG4926	Phage-related protein	NA
UHGV-2030142_32	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2030142_33	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-2030142_33	UniRef90	UniRef90_UPI0018A91C78	BhlA/UviB family holin-like peptide	NA
UHGV-2030142_33	eggNOG-mapper	536232.CLM_2038	BhlA holin family	NA
UHGV-2030142_33	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-2030142_34	KOfam	K22348	moxA; manganese oxidase [EC:1.16.3.3]	NA
UHGV-2030142_34	UniRef90	UniRef90_UPI001AEB58DB	multicopper oxidase domain-containing protein	NA
UHGV-2030142_34	eggNOG-mapper	545697.HMPREF0216_03001	PFAM multicopper oxidase	NA
UHGV-2030142_34	Pfam	PF07731	Multicopper oxidase	Cu-oxidase_2
UHGV-2030142_34	COG	COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	NA
UHGV-2030142_35	UniRef90	UniRef90_A0A1C6G8T6	zf-trcl domain-containing protein	NA
UHGV-2030142_35	eggNOG-mapper	1414720.CBYM010000003_gene438	Probable zinc-ribbon domain	NA
UHGV-2030142_35	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-2030142_35	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-2030142_36	eggNOG-mapper	1414720.CBYM010000003_gene433	glycosyl transferase family	NA
UHGV-2030142_36	COG	COG1216	Glycosyltransferase, GT2 family	NA