UHGV-2030450

Genome information

Genome length 33,580 bps

CDS count 41

Completeness 97.25% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-2030450
vOTU ID	vOTU-011045
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029135\|Ga0168740_100375\|provirus_1_39836
BioSample	SAMEA2737721
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.25% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.67
Jumbo phage	No

Genome content
Genome length	33,580 bps
GC content	59.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.14%
Average CDS length	773.63 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2030450_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2030450_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2030450_1	UniRef90	UniRef90_A0A173YNG2	Recombinase	NA
UHGV-2030450_1	eggNOG-mapper	657322.FPR_16100	NA	NA
UHGV-2030450_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2030450_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2030450_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2030450_2	UniRef90	UniRef90_A0A1C5UWP9	Zn_ribbon_recom domain-containing protein	NA
UHGV-2030450_2	eggNOG-mapper	748224.HMPREF9436_01608	NA	NA
UHGV-2030450_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2030450_3	PHROG	phrog_5763	NA	unknown function
UHGV-2030450_3	eggNOG-mapper	1235800.C819_02269	NA	NA
UHGV-2030450_4	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-2030450_4	UniRef90	UniRef90_A0A291T8I8	Spo0A_C domain-containing protein	NA
UHGV-2030450_4	eggNOG-mapper	1123288.SOV_4c01700	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-2030450_4	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-2030450_4	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-2030450_4	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-2030450_5	PHROG	phrog_263	holin	lysis
UHGV-2030450_5	UniRef90	UniRef90_A0A2A7AI87	Phage holin	NA
UHGV-2030450_5	eggNOG-mapper	718252.FP2_06470	SPP1 phage holin	NA
UHGV-2030450_5	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2030450_5	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2030450_5	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-2030450_6	PHROG	phrog_4105	NA	unknown function
UHGV-2030450_6	eggNOG-mapper	718252.FP2_06480	NA	NA
UHGV-2030450_8	KOfam	K07273	acm; lysozyme	NA
UHGV-2030450_8	PHROG	phrog_291	endolysin	lysis
UHGV-2030450_8	UniRef90	UniRef90_A0A173W4B0	Autolytic lysozyme	NA
UHGV-2030450_8	eggNOG-mapper	411483.FAEPRAA2165_00002	hydrolase, family 25	NA
UHGV-2030450_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2030450_8	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2030450_8	Structural annotation	PF01183, COG3757	NA	NA
UHGV-2030450_10	PHROG	phrog_28526	NA	unknown function
UHGV-2030450_10	UniRef90	UniRef90_A0A2A7AIE2	Antitoxin	NA
UHGV-2030450_10	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-2030450_10	Pfam	PF04255	NA	DUF433
UHGV-2030450_12	PHROG	phrog_9534	head protein	head and packaging
UHGV-2030450_12	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-2030450_12	Structural annotation	PF21567	NA	NA
UHGV-2030450_13	PHROG	phrog_538	minor tail protein	tail
UHGV-2030450_13	UniRef90	UniRef90_UPI001899858F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2030450_13	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-2030450_13	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2030450_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2030450_14	PHROG	phrog_36410	NA	unknown function
UHGV-2030450_14	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-2030450_14	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-2030450_14	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2030450_15	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2030450_15	UniRef90	UniRef90_A0A291T8F4	TMP_3 domain-containing protein	NA
UHGV-2030450_15	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-2030450_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2030450_15	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2030450_15	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2030450_16	PHROG	phrog_706	NA	unknown function
UHGV-2030450_16	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-2030450_16	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-2030450_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2030450_16	Structural annotation	PF06854	NA	NA
UHGV-2030450_17	PHROG	phrog_4450	NA	unknown function
UHGV-2030450_17	Pfam	PF20378	NA	DUF6673
UHGV-2030450_17	Structural annotation	PF20378	NA	NA
UHGV-2030450_18	PHROG	phrog_820	major tail protein	tail
UHGV-2030450_18	eggNOG-mapper	718252.FP2_06610	NA	NA
UHGV-2030450_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2030450_19	PHROG	phrog_3266	tail completion	connector
UHGV-2030450_19	UniRef90	UniRef90_UPI001178914F	chloramphenicol resistance protein	NA
UHGV-2030450_19	eggNOG-mapper	718252.FP2_06620	NA	NA
UHGV-2030450_19	Structural annotation	PF12691	NA	NA
UHGV-2030450_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2030450_20	UniRef90	UniRef90_UPI0016528549	minor capsid protein	NA
UHGV-2030450_20	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-2030450_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2030450_20	Structural annotation	PF11114	NA	NA
UHGV-2030450_21	PHROG	phrog_3366	NA	unknown function
UHGV-2030450_21	Structural annotation	PF20536	NA	NA
UHGV-2030450_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2030450_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-2030450_23	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-2030450_23	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-2030450_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2030450_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2030450_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2030450_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2030450_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2030450_24	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-2030450_24	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-2030450_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2030450_24	Structural annotation	PF06810	NA	NA
UHGV-2030450_25	PHROG	phrog_3675	NA	unknown function
UHGV-2030450_25	UniRef90	UniRef90_A0A2A7AIK7	Dihydrolipoyl dehydrogenase	NA
UHGV-2030450_25	eggNOG-mapper	1122173.AXVL01000018_gene435	YjcQ protein	NA
UHGV-2030450_25	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2030450_25	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-2030450_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2030450_27	UniRef90	UniRef90_UPI001CBDED93	phage minor capsid protein	NA
UHGV-2030450_27	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-2030450_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2030450_27	COG	COG2369	NA	NA
UHGV-2030450_27	Structural annotation	PF06152	NA	NA
UHGV-2030450_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-2030450_28	UniRef90	UniRef90_A0A291T9A9	Capsid protein	NA
UHGV-2030450_28	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-2030450_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2030450_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2030450_29	PHROG	phrog_10250	NA	unknown function
UHGV-2030450_29	UniRef90	UniRef90_A0A1Q6JIS8	Terminase_6C domain-containing protein	NA
UHGV-2030450_29	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-2030450_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2030450_29	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2030450_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2030450_29	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2030450_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2030450_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2030450_30	UniRef90	UniRef90_A0A2A7AI72	Terminase small subunit	NA
UHGV-2030450_30	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-2030450_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2030450_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2030450_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2030450_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2030450_31	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2030450_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2030450_32	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2030450_32	UniRef90	UniRef90_UPI00122CFAB3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2030450_32	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-2030450_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2030450_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2030450_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2030450_33	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2030450_33	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2030450_33	UniRef90	UniRef90_A0A2A7AI73	DNA primase	NA
UHGV-2030450_33	eggNOG-mapper	999413.HMPREF1094_00232	Primase C terminal 2 (PriCT-2)	NA
UHGV-2030450_33	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2030450_33	Pfam	PF13481	AAA domain	AAA_25
UHGV-2030450_33	COG	COG3598	RecA-family ATPase	NA
UHGV-2030450_33	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2030450_34	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2030450_34	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2030450_34	UniRef90	UniRef90_A0A1Q6JIT4	DEAD/DEAH box helicase	NA
UHGV-2030450_34	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-2030450_34	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2030450_34	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2030450_34	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2030450_34	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2030450_34	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2030450_35	PHROG	phrog_2698	NA	unknown function
UHGV-2030450_35	UniRef90	UniRef90_A0A291T9B6	NA	NA
UHGV-2030450_35	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-2030450_35	Structural annotation	PF05037	NA	NA
UHGV-2030450_36	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2030450_36	UniRef90	UniRef90_UPI00122C2B12	ATP-binding protein	NA
UHGV-2030450_36	eggNOG-mapper	1273103.NM10_06861	AAA domain	NA
UHGV-2030450_36	Pfam	PF13479	AAA domain	AAA_24
UHGV-2030450_36	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2030450_37	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2030450_37	PHROG	phrog_1499	NA	unknown function
UHGV-2030450_37	UniRef90	UniRef90_A0A2A7AIJ9	Chromosome segregation protein SMC	NA
UHGV-2030450_37	eggNOG-mapper	1235798.C817_04766	AAA ATPase domain	NA
UHGV-2030450_37	Pfam	PF13476	AAA domain	AAA_23
UHGV-2030450_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2030450_37	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2030450_38	PHROG	phrog_1733	NA	unknown function
UHGV-2030450_38	UniRef90	UniRef90_UPI001967A828	cell envelope integrity protein TolA	NA
UHGV-2030450_38	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-2030450_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2030450_39	Structural annotation	PF12957	NA	NA
UHGV-2030450_40	Structural annotation	PF12270, NF040944	NA	NA
UHGV-2030450_41	UniRef90	UniRef90_A0A2A7BGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-2030450_41	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA