UHGV-2030517

Genome information

Genome length 36,932 bps

CDS count 59

Completeness 95.30% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-2030517
vOTU ID	vOTU-014380
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029120\|Ga0168814_100088\|provirus_78188_115119
BioSample	SAMEA2737795
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.30% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7.97
Jumbo phage	No

Genome content
Genome length	36,932 bps
GC content	44.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.20%
Average CDS length	576.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2030517_1	KOfam	K17320	lplC; putative aldouronate transport system permease protein	NA
UHGV-2030517_1	PHROG	phrog_1577	NA	unknown function
UHGV-2030517_1	UniRef90	UniRef90_A0A1C5WZY2	Inner membrane ABC transporter permease protein ycjP	NA
UHGV-2030517_1	eggNOG-mapper	1298920.KI911353_gene1189	Binding-protein-dependent transport system inner membrane component	NA
UHGV-2030517_1	Pfam	PF00528	Binding-protein-dependent transport system inner membrane component	BPD_transp_1
UHGV-2030517_1	COG	COG0395	ABC-type glycerol-3-phosphate transport system, permease component	NA
UHGV-2030517_2	KOfam	K14059	int; integrase	NA
UHGV-2030517_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2030517_2	UniRef90	UniRef90_A0A417QI45	Tyr recombinase domain-containing protein	NA
UHGV-2030517_2	eggNOG-mapper	1232453.BAIF02000110_gene768	Phage integrase family	NA
UHGV-2030517_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2030517_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2030517_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2030517_4	PHROG	phrog_87	metallo-protease	other
UHGV-2030517_4	UniRef90	UniRef90_A0A3D5M0U7	Peptidase_M78 domain-containing protein	NA
UHGV-2030517_4	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-2030517_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2030517_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2030517_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2030517_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2030517_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2030517_5	UniRef90	UniRef90_A0A3R6AJC2	XRE family transcriptional regulator	NA
UHGV-2030517_5	eggNOG-mapper	1235798.C817_02945	Helix-turn-helix XRE-family like proteins	NA
UHGV-2030517_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2030517_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2030517_5	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-2030517_6	UniRef90	UniRef90_A0A7U9RSM2	HTH cro/C1-type domain-containing protein	NA
UHGV-2030517_6	eggNOG-mapper	445972.ANACOL_00136	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2030517_6	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2030517_10	UniRef90	UniRef90_A0A417QIK9	HTH cro/C1-type domain-containing protein	NA
UHGV-2030517_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2030517_14	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-2030517_14	Structural annotation	PF21578	NA	NA
UHGV-2030517_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2030517_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2030517_15	UniRef90	UniRef90_A0A373K1H9	RNase H type-1 domain-containing protein	NA
UHGV-2030517_15	eggNOG-mapper	411902.CLOBOL_05701	RNase H	NA
UHGV-2030517_15	Pfam	PF00075	RNase H	RNase_H
UHGV-2030517_15	COG	COG0328	Ribonuclease HI	NA
UHGV-2030517_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2030517_16	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-2030517_17	PHROG	phrog_4433	NA	unknown function
UHGV-2030517_17	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-2030517_17	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2030517_17	Structural annotation	PF12120, NF000318	NA	NA
UHGV-2030517_18	PHROG	phrog_8470	NA	unknown function
UHGV-2030517_18	UniRef90	UniRef90_UPI001D0E6B3F	PcfJ domain-containing protein	NA
UHGV-2030517_18	eggNOG-mapper	411902.CLOBOL_05697	PcfJ-like protein	NA
UHGV-2030517_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2030517_18	Structural annotation	PF14284	NA	NA
UHGV-2030517_19	PHROG	phrog_15077	NA	unknown function
UHGV-2030517_19	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-2030517_19	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-2030517_19	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2030517_20	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-2030517_20	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-2030517_21	UniRef90	UniRef90_A0A373K497	Ribbon-helix-helix protein, CopG family	NA
UHGV-2030517_22	Structural annotation	PF06257, NF037951, COG4466	NA	NA
UHGV-2030517_23	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-2030517_23	UniRef90	UniRef90_A0A373K1C3	NA	NA
UHGV-2030517_23	eggNOG-mapper	1211817.CCAT010000008_gene928	NA	NA
UHGV-2030517_23	Pfam	PF12961	NA	DUF3850
UHGV-2030517_23	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-2030517_29	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-2030517_30	Structural annotation	PF11184	NA	NA
UHGV-2030517_32	UniRef90	UniRef90_A0A3D5M0V6	RHH_1 domain-containing protein	NA
UHGV-2030517_32	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-2030517_32	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-2030517_33	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2030517_33	PHROG	phrog_1	integrase	integration and excision
UHGV-2030517_33	UniRef90	UniRef90_A0A6L5YGD3	Tyrosine-type recombinase/integrase	NA
UHGV-2030517_33	eggNOG-mapper	1304866.K413DRAFT_3024	Belongs to the 'phage' integrase family	NA
UHGV-2030517_33	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2030517_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2030517_33	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2030517_33	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2030517_34	UniRef90	UniRef90_R6BYX9	Transcriptional activator	NA
UHGV-2030517_34	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-2030517_35	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2030517_35	UniRef90	UniRef90_UPI0011A97354	transposase	NA
UHGV-2030517_35	eggNOG-mapper	357809.Cphy_2972	transposase activity	NA
UHGV-2030517_35	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-2030517_35	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2030517_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2030517_36	PHROG	phrog_10250	NA	unknown function
UHGV-2030517_36	UniRef90	UniRef90_A0A3D5M0W3	Terminase	NA
UHGV-2030517_36	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-2030517_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-2030517_36	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2030517_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-2030517_37	UniRef90	UniRef90_A0A3D5M0W8	Capsid protein	NA
UHGV-2030517_37	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-2030517_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2030517_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2030517_38	UniRef90	UniRef90_A0A3D5M147	Minor capsid protein	NA
UHGV-2030517_38	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2030517_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2030517_38	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2030517_38	Structural annotation	PF06152	NA	NA
UHGV-2030517_40	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2030517_40	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-2030517_41	PHROG	phrog_422	major head protein	head and packaging
UHGV-2030517_41	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-2030517_41	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-2030517_41	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2030517_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2030517_42	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-2030517_43	PHROG	phrog_8710	NA	unknown function
UHGV-2030517_43	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-2030517_43	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2030517_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2030517_44	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-2030517_45	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2030517_45	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-2030517_45	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-2030517_45	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2030517_45	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2030517_46	PHROG	phrog_820	major tail protein	tail
UHGV-2030517_46	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-2030517_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2030517_47	PHROG	phrog_8300	NA	unknown function
UHGV-2030517_47	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-2030517_47	Structural annotation	PF06854	NA	NA
UHGV-2030517_48	PHROG	phrog_8355	NA	unknown function
UHGV-2030517_48	UniRef90	UniRef90_A0A2Y9BGF3	Bacteriophage Gp15 protein	NA
UHGV-2030517_48	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-2030517_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2030517_49	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-2030517_49	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2030517_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2030517_49	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2030517_50	PHROG	phrog_1194	NA	unknown function
UHGV-2030517_50	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-2030517_50	Pfam	PF20458	NA	DUF6711
UHGV-2030517_50	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2030517_51	PHROG	phrog_18190	NA	unknown function
UHGV-2030517_51	UniRef90	UniRef90_R7BGL9	NA	NA
UHGV-2030517_51	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-2030517_51	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2030517_53	PHROG	phrog_17196	kinase	other
UHGV-2030517_53	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-2030517_53	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-2030517_54	eggNOG-mapper	1235793.C809_01950	Phage tail-collar fibre protein	NA
UHGV-2030517_54	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2030517_54	Structural annotation	PF08931	NA	NA
UHGV-2030517_56	PHROG	phrog_17180	NA	unknown function
UHGV-2030517_56	eggNOG-mapper	1268240.ATFI01000012_gene1337	NA	NA
UHGV-2030517_56	Structural annotation	PF14282	NA	NA
UHGV-2030517_57	PHROG	phrog_937	hemolysin	other
UHGV-2030517_58	PHROG	phrog_15303	NA	unknown function
UHGV-2030517_58	eggNOG-mapper	1291050.JAGE01000001_gene431	NA	NA
UHGV-2030517_59	KOfam	K07273	acm; lysozyme	NA
UHGV-2030517_59	PHROG	phrog_291	endolysin	lysis
UHGV-2030517_59	UniRef90	UniRef90_A0A7U9QWG5	Autolytic lysozyme	NA
UHGV-2030517_59	eggNOG-mapper	97139.C824_02634	Glycosyl hydrolases family 25	NA
UHGV-2030517_59	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2030517_59	COG	COG1388	LysM repeat	NA
UHGV-2030517_59	Structural annotation	PF01183, PF01471, COG3757	NA	NA