UHGV-2030521

Genome information

Genome length 32,411 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-2030521
vOTU ID	vOTU-071493
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029120\|Ga0168814_100012\|provirus_62335_94745
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.62
Jumbo phage	No

Genome content
Genome length	32,411 bps
GC content	50.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	88.85%
Average CDS length	591.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2030521_1	KOfam	K22132	tcdA; tRNA threonylcarbamoyladenosine dehydratase	NA
UHGV-2030521_1	PHROG	phrog_37075	NA	unknown function
UHGV-2030521_1	UniRef90	UniRef90_A0A316RCB0	tRNA threonylcarbamoyladenosine dehydratase	NA
UHGV-2030521_1	eggNOG-mapper	1410628.JNKS01000012_gene2741	ThiF family	NA
UHGV-2030521_1	PADLOC	E1E2_00023	E1-E2	CBASS
UHGV-2030521_1	Pfam	PF00899	ThiF family	ThiF
UHGV-2030521_1	COG	COG1179	tRNA A37 threonylcarbamoyladenosine dehydratase	NA
UHGV-2030521_2	UniRef90	UniRef90_A0A316R7E8	RHH_1 domain-containing protein	NA
UHGV-2030521_2	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-2030521_2	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-2030521_5	KOfam	K14059	int; integrase	NA
UHGV-2030521_5	PHROG	phrog_1	integrase	integration and excision
UHGV-2030521_5	UniRef90	UniRef90_A0A316RE68	Tyr recombinase domain-containing protein	NA
UHGV-2030521_5	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-2030521_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2030521_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2030521_5	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2030521_6	PHROG	phrog_1847	NA	unknown function
UHGV-2030521_6	UniRef90	UniRef90_R6INK9	T5orf172 domain-containing protein	NA
UHGV-2030521_6	eggNOG-mapper	1232443.BAIA02000080_gene905	T5orf172	NA
UHGV-2030521_6	Pfam	PF13250	NA	DUF4041
UHGV-2030521_6	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2030521_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2030521_6	Structural annotation	PF13250, PF19824	NA	NA
UHGV-2030521_7	PHROG	phrog_87	metallo-protease	other
UHGV-2030521_7	UniRef90	UniRef90_A0A316RCR6	Peptidase_M78 domain-containing protein	NA
UHGV-2030521_7	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-2030521_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2030521_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2030521_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2030521_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2030521_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2030521_8	UniRef90	UniRef90_A0A1Q6LC39	HTH cro/C1-type domain-containing protein	NA
UHGV-2030521_8	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2030521_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2030521_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2030521_8	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2030521_9	UniRef90	UniRef90_A0A316R8G0	HTH cro/C1-type domain-containing protein	NA
UHGV-2030521_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2030521_9	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2030521_10	PHROG	phrog_668	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2030521_11	PHROG	phrog_33952	NA	unknown function
UHGV-2030521_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2030521_13	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-2030521_13	Structural annotation	PF21578	NA	NA
UHGV-2030521_14	PHROG	phrog_34937	NA	unknown function
UHGV-2030521_15	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2030521_15	UniRef90	UniRef90_R6ISF1	NA	NA
UHGV-2030521_15	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-2030521_15	Pfam	PF06356	NA	DUF1064
UHGV-2030521_15	Structural annotation	PF06356	NA	NA
UHGV-2030521_17	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2030521_17	UniRef90	UniRef90_UPI001D105E64	phage tail tape measure protein	NA
UHGV-2030521_17	eggNOG-mapper	748727.CLJU_c31220	phage tail tape measure protein	NA
UHGV-2030521_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2030521_17	COG	COG5283	Phage-related tail protein	NA
UHGV-2030521_18	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-2030521_18	PHROG	phrog_359	DNA methyltransferase	other
UHGV-2030521_18	UniRef90	UniRef90_A0A417HQJ2	Modification methylase MunI	NA
UHGV-2030521_18	eggNOG-mapper	411468.CLOSCI_01467	Belongs to the MT-A70-like family	NA
UHGV-2030521_18	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-2030521_18	Pfam	PF05063	MT-A70	MT-A70
UHGV-2030521_18	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-2030521_18	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-2030521_20	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2030521_20	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2030521_20	UniRef90	UniRef90_R6ILQ3	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-2030521_20	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-2030521_20	Pfam	PF00692	dUTPase	dUTPase
UHGV-2030521_20	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2030521_23	PHROG	phrog_1558	NA	unknown function
UHGV-2030521_23	UniRef90	UniRef90_A0A316RAK3	Sigma70_r4_2 domain-containing protein	NA
UHGV-2030521_23	eggNOG-mapper	632245.CLP_2622	NA	NA
UHGV-2030521_23	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2030521_23	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-2030521_24	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2030521_24	UniRef90	UniRef90_A0A844FGQ3	HNH endonuclease	NA
UHGV-2030521_24	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-2030521_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2030521_25	UniRef90	UniRef90_A0A316RD76	Phage terminase small subunit P27 family	NA
UHGV-2030521_25	eggNOG-mapper	742741.HMPREF9475_00421	Phage terminase, small subunit	NA
UHGV-2030521_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2030521_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2030521_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2030521_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2030521_26	UniRef90	UniRef90_A0A316R7M0	Terminase large subunit	NA
UHGV-2030521_26	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-2030521_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2030521_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2030521_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2030521_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2030521_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-2030521_27	UniRef90	UniRef90_A0A316R7D3	Phage portal protein	NA
UHGV-2030521_27	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-2030521_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2030521_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2030521_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2030521_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2030521_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2030521_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2030521_28	UniRef90	UniRef90_A0A316R8I3	Clp protease	NA
UHGV-2030521_28	eggNOG-mapper	411468.CLOSCI_01490	Clp protease	NA
UHGV-2030521_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2030521_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2030521_28	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2030521_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-2030521_29	UniRef90	UniRef90_A0A316RM35	Phage major capsid protein	NA
UHGV-2030521_29	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2030521_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2030521_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2030521_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2030521_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2030521_30	UniRef90	UniRef90_A0A316R9F5	Phage gp6-like head-tail connector protein	NA
UHGV-2030521_30	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-2030521_30	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2030521_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2030521_30	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2030521_31	UniRef90	UniRef90_A0A316R8D9	Phage head-tail adapter protein	NA
UHGV-2030521_31	eggNOG-mapper	195103.CPF_1582	Phage head-tail adaptor	NA
UHGV-2030521_31	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2030521_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2030521_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2030521_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2030521_32	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-2030521_32	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-2030521_32	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2030521_32	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-2030521_33	PHROG	phrog_78	tail terminator	connector
UHGV-2030521_33	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-2030521_33	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2030521_34	PHROG	phrog_88	major tail protein	tail
UHGV-2030521_34	UniRef90	UniRef90_A0A316RAJ2	Major tail protein	NA
UHGV-2030521_34	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-2030521_34	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2030521_34	COG	COG5492	NA	NA
UHGV-2030521_34	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2030521_35	PHROG	phrog_13494	NA	unknown function
UHGV-2030521_35	eggNOG-mapper	742741.HMPREF9475_00431	NA	NA
UHGV-2030521_36	PHROG	phrog_25901	NA	unknown function
UHGV-2030521_36	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-2030521_37	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2030521_37	UniRef90	UniRef90_A0A316R7C3	Phage tail tape measure protein	NA
UHGV-2030521_37	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-2030521_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2030521_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2030521_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2030521_38	UniRef90	UniRef90_UPI0019689066	phage tail protein	NA
UHGV-2030521_38	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-2030521_38	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2030521_38	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2030521_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-2030521_38	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2030521_39	PHROG	phrog_13289	tail protein	tail
UHGV-2030521_39	UniRef90	UniRef90_A0A316RM27	Prophage_tail domain-containing protein	NA
UHGV-2030521_39	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-2030521_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2030521_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2030521_39	COG	COG4926	Phage-related protein	NA
UHGV-2030521_40	UniRef90	UniRef90_A0A316R9D9	BppU_N domain-containing protein	NA
UHGV-2030521_40	eggNOG-mapper	641107.CDLVIII_4353	NA	NA
UHGV-2030521_40	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2030521_40	Structural annotation	PF00386, NF033147	NA	NA
UHGV-2030521_41	UniRef90	UniRef90_R6J123	ATP synthase B chain	NA
UHGV-2030521_42	PHROG	phrog_4105	NA	unknown function
UHGV-2030521_42	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-2030521_43	PHROG	phrog_263	holin	lysis
UHGV-2030521_43	UniRef90	UniRef90_R6JQI4	Holin SPP1 family	NA
UHGV-2030521_43	eggNOG-mapper	1121344.JHZO01000004_gene1372	SPP1 phage holin	NA
UHGV-2030521_43	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2030521_43	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2030521_43	Structural annotation	PF04688	NA	NA
UHGV-2030521_44	UniRef90	UniRef90_R6J3S0	Peptidase_C39_2 domain-containing protein	NA
UHGV-2030521_44	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-2030521_44	COG	COG4990	Predicted cysteine peptidase, C39 family	NA
UHGV-2030521_44	Structural annotation	PF11814, NF033920, COG4990	NA	NA
UHGV-2030521_46	UniRef90	UniRef90_A0A315YPS7	Helix-turn-helix protein	NA
UHGV-2030521_46	eggNOG-mapper	1280668.ATVT01000007_gene1190	sequence-specific DNA binding	NA
UHGV-2030521_46	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-2030521_47	Structural annotation	PF19923, NF009981, COG0355	NA	NA