UHGV-2031053

Genome information

Genome length 28,151 bps

CDS count 49

Completeness 75.67% (medium-quality)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-2031053
vOTU ID	vOTU-040194
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029119\|Ga0168816_100385\|provirus_28399_56549
BioSample	SAMEA2737797
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.88
Jumbo phage	No

Genome content
Genome length	28,151 bps
GC content	28.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.02%
Average CDS length	525.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2031053_1	KOfam	K14059	int; integrase	NA
UHGV-2031053_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2031053_1	UniRef90	UniRef90_A0A3D4T5B0	Tyr recombinase domain-containing protein	NA
UHGV-2031053_1	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-2031053_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2031053_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2031053_1	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2031053_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2031053_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2031053_2	UniRef90	UniRef90_R7F6V6	LexA repressor	NA
UHGV-2031053_2	eggNOG-mapper	1203606.HMPREF1526_00998	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2031053_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2031053_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2031053_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2031053_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2031053_2	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2031053_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2031053_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2031053_3	UniRef90	UniRef90_A0A1Q6LE94	HTH cro/C1-type domain-containing protein	NA
UHGV-2031053_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2031053_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2031053_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2031053_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2031053_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2031053_4	UniRef90	UniRef90_A0A6A8HM65	Helix-turn-helix domain-containing protein	NA
UHGV-2031053_4	eggNOG-mapper	482234.SCAZ3_06285	transcriptional	NA
UHGV-2031053_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2031053_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2031053_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2031053_5	Structural annotation	PF12728, NF040990	NA	NA
UHGV-2031053_8	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2031053_8	UniRef90	UniRef90_R7IWH8	HNHc domain-containing protein	NA
UHGV-2031053_8	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-2031053_9	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-2031053_9	UniRef90	UniRef90_UPI0018F259C3	conserved phage C-terminal domain-containing protein	NA
UHGV-2031053_9	eggNOG-mapper	1460640.JCM19046_3537	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-2031053_9	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-2031053_9	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-2031053_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2031053_9	Structural annotation	PF09524, PF04492, TIGR02220, TIGR01714	NA	NA
UHGV-2031053_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2031053_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2031053_10	UniRef90	UniRef90_A0A1Q6K3G5	DNA helicase	NA
UHGV-2031053_10	eggNOG-mapper	935948.KE386495_gene1689	Participates in initiation and elongation during chromosome replication	NA
UHGV-2031053_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2031053_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2031053_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-2031053_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2031053_15	PHROG	phrog_625	NA	unknown function
UHGV-2031053_15	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-2031053_15	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-2031053_15	Structural annotation	PF12961	NA	NA
UHGV-2031053_20	Structural annotation	PF11781, MF_00327	NA	NA
UHGV-2031053_23	Structural annotation	PF00486, COG1654	NA	NA
UHGV-2031053_26	PHROG	phrog_1233	NA	unknown function
UHGV-2031053_26	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-2031053_26	Structural annotation	PF13058	NA	NA
UHGV-2031053_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2031053_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2031053_27	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-2031053_27	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-2031053_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2031053_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2031053_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2031053_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2031053_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2031053_28	UniRef90	UniRef90_R6H5U4	Phage terminase large subunit PBSX family	NA
UHGV-2031053_28	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-2031053_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2031053_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2031053_28	Structural annotation	PF04466, MF_04145, NF002340, COG5410	NA	NA
UHGV-2031053_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2031053_29	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2031053_29	UniRef90	UniRef90_R6HF73	Phage terminase large subunit PBSX family	NA
UHGV-2031053_29	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-2031053_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2031053_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2031053_29	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2031053_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-2031053_30	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-2031053_30	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2031053_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2031053_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2031053_31	PHROG	phrog_28652	NA	unknown function
UHGV-2031053_31	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-2031053_31	eggNOG-mapper	1235798.C817_03480	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2031053_31	COG	COG2369	NA	NA
UHGV-2031053_31	Structural annotation	TIGR01641	NA	NA
UHGV-2031053_33	PHROG	phrog_1454	NA	unknown function
UHGV-2031053_36	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2031053_36	UniRef90	UniRef90_A0A3D1PKZ2	Phage capsid protein	NA
UHGV-2031053_36	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-2031053_36	Pfam	PF14265	NA	DUF4355
UHGV-2031053_36	Structural annotation	PF14265	NA	NA
UHGV-2031053_37	UniRef90	UniRef90_A0A3D1PN29	S-l_SbsC_C domain-containing protein	NA
UHGV-2031053_37	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-2031053_37	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2031053_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2031053_37	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2031053_38	eggNOG-mapper	445972.ANACOL_01847	NA	NA
UHGV-2031053_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2031053_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2031053_42	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-2031053_42	Structural annotation	PF05657	NA	NA
UHGV-2031053_43	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2031053_44	Pfam	PF19591	NA	DUF6096
UHGV-2031053_44	Structural annotation	PF12363	NA	NA
UHGV-2031053_45	PHROG	phrog_11491	NA	unknown function
UHGV-2031053_45	UniRef90	UniRef90_R6U6A5	Prophage pi3 protein 59	NA
UHGV-2031053_45	eggNOG-mapper	1410674.JNKU01000056_gene1899	NA	NA
UHGV-2031053_45	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-2031053_45	Structural annotation	PF11355, PF13828, MF_00791, TIGR02588, COG5633	NA	NA
UHGV-2031053_46	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-2031053_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2031053_46	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-2031053_46	COG	COG5283	Phage-related tail protein	NA
UHGV-2031053_46	Structural annotation	PF09486, NF038178, COG1382	NA	NA
UHGV-2031053_47	PHROG	phrog_1194	NA	unknown function
UHGV-2031053_47	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2031053_48	PHROG	phrog_6616	tail protein	tail
UHGV-2031053_48	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-2031053_48	COG	COG4926	Phage-related protein	NA
UHGV-2031053_48	Structural annotation	PF21683, TIGR02126, COG5437	NA	NA
UHGV-2031053_49	eggNOG-mapper	1120998.AUFC01000030_gene2248	NA	NA