UHGV-2031076

Genome information

Genome length 59,588 bps

CDS count 86

Completeness 83.27% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-2031076
vOTU ID	vOTU-016037
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029187\|Ga0168669_100166\|provirus_12958_72545
BioSample	SAMEA2737650
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.77
Jumbo phage	No

Genome content
Genome length	59,588 bps
GC content	40.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	86
CDS density	90.70%
Average CDS length	632.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2031076_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2031076_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2031076_1	UniRef90	UniRef90_B0NM83	Site-specific recombinase, phage integrase family	NA
UHGV-2031076_1	eggNOG-mapper	449673.BACSTE_00585	Phage integrase SAM-like domain	NA
UHGV-2031076_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2031076_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2031076_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2031076_1	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2031076_3	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-2031076_3	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-2031076_3	UniRef90	UniRef90_A0A415SF92	Recombinase family protein	NA
UHGV-2031076_3	eggNOG-mapper	1127692.HMPREF9075_00071	NA	NA
UHGV-2031076_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2031076_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2031076_3	Structural annotation	PF00239, NF009949, COG1961	NA	NA
UHGV-2031076_5	eggNOG-mapper	471870.BACINT_00445	NA	NA
UHGV-2031076_6	UniRef90	UniRef90_D1K5B5	LPD29 domain-containing protein	NA
UHGV-2031076_6	eggNOG-mapper	1519439.JPJG01000053_gene1369	DnaJ molecular chaperone homology domain	NA
UHGV-2031076_6	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-2031076_6	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-2031076_6	Structural annotation	PF18847	NA	NA
UHGV-2031076_8	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2031076_8	UniRef90	UniRef90_UPI000E74D478	HNH endonuclease	NA
UHGV-2031076_8	eggNOG-mapper	484018.BACPLE_01044	HNH nucleases	NA
UHGV-2031076_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2031076_9	eggNOG-mapper	484018.BACPLE_01045	NA	NA
UHGV-2031076_10	UniRef90	UniRef90_UPI000E75AC29	NA	NA
UHGV-2031076_10	eggNOG-mapper	411477.PARMER_01970	NA	NA
UHGV-2031076_10	Pfam	PF14362	NA	DUF4407
UHGV-2031076_10	COG	COG1256	Flagellar hook-associated protein FlgK	NA
UHGV-2031076_11	eggNOG-mapper	272134.KB731324_gene3499	NA	NA
UHGV-2031076_12	eggNOG-mapper	457424.BFAG_04897	NA	NA
UHGV-2031076_14	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2031076_14	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2031076_14	UniRef90	UniRef90_A0A415SHK7	Phage antirepressor	NA
UHGV-2031076_14	eggNOG-mapper	1122971.BAME01000225_gene6795	BRO family, N-terminal domain	NA
UHGV-2031076_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2031076_14	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2031076_14	COG	COG3617	Prophage antirepressor	NA
UHGV-2031076_14	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2031076_16	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2031076_19	PHROG	phrog_14682	NA	unknown function
UHGV-2031076_19	UniRef90	UniRef90_A8AT53	Gp29	NA
UHGV-2031076_19	eggNOG-mapper	411901.BACCAC_01175	NA	NA
UHGV-2031076_23	Structural annotation	NF004688	NA	NA
UHGV-2031076_28	PHROG	phrog_872	NA	unknown function
UHGV-2031076_28	UniRef90	UniRef90_A0A3E4KB68	NA	NA
UHGV-2031076_28	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-2031076_28	Pfam	PF11195	NA	DUF2829
UHGV-2031076_28	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2031076_28	Structural annotation	PF11195	NA	NA
UHGV-2031076_29	KOfam	K04485	radA, sms; DNA repair protein RadA/Sms	NA
UHGV-2031076_29	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2031076_29	UniRef90	UniRef90_UPI00125CCE12	AAA family ATPase	NA
UHGV-2031076_29	eggNOG-mapper	1121887.AUDK01000018_gene3207	AAA domain	NA
UHGV-2031076_29	Pfam	PF13481	AAA domain	AAA_25
UHGV-2031076_29	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-2031076_29	Structural annotation	PF06745, MF_01498, TIGR00416, COG0467	NA	NA
UHGV-2031076_30	Structural annotation	PF02566	NA	NA
UHGV-2031076_31	PHROG	phrog_1365	NA	unknown function
UHGV-2031076_32	PHROG	phrog_1281	NA	unknown function
UHGV-2031076_32	UniRef90	UniRef90_A0A174IJF6	Phage-associated protein	NA
UHGV-2031076_32	eggNOG-mapper	1095752.HMPREF9969_2152	NA	NA
UHGV-2031076_32	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-2031076_32	COG	COG3600	NA	NA
UHGV-2031076_32	Structural annotation	PF13274, COG3600	NA	NA
UHGV-2031076_33	PHROG	phrog_8366	NA	unknown function
UHGV-2031076_33	eggNOG-mapper	991.IW20_00170	NA	NA
UHGV-2031076_34	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-2031076_34	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-2031076_34	UniRef90	UniRef90_A0A415SRF7	TMP_3 domain-containing protein	NA
UHGV-2031076_34	eggNOG-mapper	742727.HMPREF9447_04839	tape measure	NA
UHGV-2031076_34	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2031076_34	COG	COG1511	NA	NA
UHGV-2031076_34	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2031076_35	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-2031076_36	PHROG	phrog_6767	NA	unknown function
UHGV-2031076_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2031076_37	Structural annotation	PF05561, NF040576, COG3167	NA	NA
UHGV-2031076_38	PHROG	phrog_5377	NA	unknown function
UHGV-2031076_39	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-2031076_41	UniRef90	UniRef90_A0A8B2AWS5	Major capsid protein	NA
UHGV-2031076_41	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-2031076_42	Structural annotation	PF21430	NA	NA
UHGV-2031076_44	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2031076_44	UniRef90	UniRef90_A0A415SRG6	DOD-type homing endonuclease domain-containing protein	NA
UHGV-2031076_44	eggNOG-mapper	1121286.AUMT01000013_gene2660	Terminase-like family	NA
UHGV-2031076_44	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2031076_44	COG	COG5362	Phage terminase large subunit	NA
UHGV-2031076_44	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2031076_46	PHROG	phrog_64	portal protein	head and packaging
UHGV-2031076_46	UniRef90	UniRef90_A0A5P0X070	Phage portal protein	NA
UHGV-2031076_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2031076_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2031076_47	PHROG	phrog_38044	NA	unknown function
UHGV-2031076_47	UniRef90	UniRef90_UPI001BA54672	phage tail protein	NA
UHGV-2031076_47	eggNOG-mapper	657309.BXY_05160	NA	NA
UHGV-2031076_47	Structural annotation	PF14594, PF04862, PF18141, TIGR01665, NF038128, COG4926	NA	NA
UHGV-2031076_48	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-2031076_49	Structural annotation	PF09327	NA	NA
UHGV-2031076_51	eggNOG-mapper	272559.BF9343_2359	NA	NA
UHGV-2031076_52	PHROG	phrog_19698	NA	unknown function
UHGV-2031076_52	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-2031076_54	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2031076_54	PHROG	phrog_435	endolysin	lysis
UHGV-2031076_54	UniRef90	UniRef90_UPI0018997145	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2031076_54	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-2031076_54	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2031076_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2031076_54	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-2031076_55	Structural annotation	PF14607, MF_01372, NF038393	NA	NA
UHGV-2031076_56	Structural annotation	PF13385, PF17994	NA	NA
UHGV-2031076_58	PHROG	phrog_26448	NA	unknown function
UHGV-2031076_58	eggNOG-mapper	762984.HMPREF9445_00190	NA	NA
UHGV-2031076_58	Pfam	PF20647	NA	DUF6808
UHGV-2031076_58	Structural annotation	PF20647	NA	NA
UHGV-2031076_59	Structural annotation	PF08299, NF004688	NA	NA
UHGV-2031076_62	Structural annotation	PF10628	NA	NA
UHGV-2031076_65	UniRef90	UniRef90_UPI0018A04156	phage antirepressor KilAC domain-containing protein	NA
UHGV-2031076_65	eggNOG-mapper	411901.BACCAC_01209	BRO family, N-terminal domain	NA
UHGV-2031076_65	COG	COG3617	Prophage antirepressor	NA
UHGV-2031076_65	Structural annotation	PF08346, COG3561	NA	NA
UHGV-2031076_66	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2031076_66	UniRef90	UniRef90_UPI001F0A0DE7	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-2031076_66	eggNOG-mapper	1121286.AUMT01000013_gene2588	HNH endonuclease	NA
UHGV-2031076_66	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2031076_66	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2031076_66	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2031076_67	Structural annotation	PF11169	NA	NA
UHGV-2031076_68	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-2031076_68	Structural annotation	PF13384, TIGR04381	NA	NA
UHGV-2031076_69	PHROG	phrog_1818	NA	unknown function
UHGV-2031076_69	UniRef90	UniRef90_UPI001230C7A4	HAD domain-containing protein	NA
UHGV-2031076_69	eggNOG-mapper	1458859.A0A088C4I8_9CAUD	NA	NA
UHGV-2031076_69	Pfam	PF18143	HAD domain in Swiss Army Knife RNA repair proteins	HAD_SAK_2
UHGV-2031076_69	Structural annotation	PF18143, NF003937, COG0241	NA	NA
UHGV-2031076_70	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2031076_70	UniRef90	UniRef90_UPI0011DCE920	NA	NA
UHGV-2031076_70	eggNOG-mapper	762982.HMPREF9442_01214	NA	NA
UHGV-2031076_70	Pfam	PF14359	NA	DUF4406
UHGV-2031076_70	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2031076_71	Structural annotation	PF08928	NA	NA
UHGV-2031076_72	PHROG	phrog_8684	NA	unknown function
UHGV-2031076_72	UniRef90	UniRef90_UPI00189AAD7E	YopX family protein	NA
UHGV-2031076_72	eggNOG-mapper	762982.HMPREF9442_00542	YopX protein	NA
UHGV-2031076_72	Pfam	PF09643	YopX protein	YopX
UHGV-2031076_72	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2031076_73	PHROG	phrog_874	NA	unknown function
UHGV-2031076_73	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-2031076_73	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2031076_74	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-2031076_75	PHROG	phrog_12005	NA	unknown function
UHGV-2031076_78	UniRef90	UniRef90_A0A7K0JNA1	NA	NA
UHGV-2031076_79	Structural annotation	PF20020	NA	NA
UHGV-2031076_81	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2031076_81	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2031076_81	UniRef90	UniRef90_I9RH12	Helicase ATP-binding domain-containing protein	NA
UHGV-2031076_81	eggNOG-mapper	357276.EL88_11455	DNA methylase	NA
UHGV-2031076_81	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2031076_81	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2031076_81	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2031076_81	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2031076_81	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2031076_81	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-2031076_82	eggNOG-mapper	1347393.HG726022_gene3594	NA	NA
UHGV-2031076_83	PHROG	phrog_19578	NA	unknown function
UHGV-2031076_83	eggNOG-mapper	1268240.ATFI01000007_gene437	NA	NA
UHGV-2031076_84	PHROG	phrog_35728	NA	unknown function
UHGV-2031076_84	UniRef90	UniRef90_F3QQU4	Conserved domain protein	NA
UHGV-2031076_84	eggNOG-mapper	411476.BACOVA_03892	NA	NA
UHGV-2031076_84	Structural annotation	PF20338	NA	NA
UHGV-2031076_85	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-2031076_85	eggNOG-mapper	1121100.JCM6294_532	DnaD domain protein	NA
UHGV-2031076_85	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2031076_85	Structural annotation	PF20024, MF_01819, NF040642, COG0640	NA	NA
UHGV-2031076_86	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2031076_86	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2031076_86	UniRef90	UniRef90_UPI001C03709F	DEAD/DEAH box helicase	NA
UHGV-2031076_86	eggNOG-mapper	357276.EL88_11480	helicase superfamily c-terminal domain	NA
UHGV-2031076_86	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-2031076_86	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2031076_86	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2031076_86	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2031076_86	Structural annotation	PF00271, MF_01489, TIGR04095, COG1061	NA	NA