UHGV-2031116

Genome information

Genome length 38,346 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-2031116
vOTU ID	vOTU-013740
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029111\|Ga0168815_100081\|provirus_48925_87270
BioSample	SAMEA2737796
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	36
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	98.98
Jumbo phage	No

Genome content
Genome length	38,346 bps
GC content	42.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.09%
Average CDS length	671.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2031116_1	KOfam	K14059	int; integrase	NA
UHGV-2031116_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2031116_1	UniRef90	UniRef90_C5IUL7	Integrase	NA
UHGV-2031116_1	eggNOG-mapper	646413.C5IUL7_9CAUD	Phage integrase family	NA
UHGV-2031116_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2031116_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2031116_2	PHROG	phrog_19811	NA	unknown function
UHGV-2031116_2	eggNOG-mapper	469609.HMPREF0847_01328	NA	NA
UHGV-2031116_2	Structural annotation	PF14947	NA	NA
UHGV-2031116_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2031116_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2031116_3	UniRef90	UniRef90_A0A564S8H8	LexA repressor	NA
UHGV-2031116_3	eggNOG-mapper	1035189.HMPREF9954_0283	Peptidase S24-like	NA
UHGV-2031116_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2031116_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2031116_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2031116_3	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-2031116_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2031116_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2031116_4	UniRef90	UniRef90_F9PZ12	DNA-binding helix-turn-helix protein	NA
UHGV-2031116_4	eggNOG-mapper	1403946.Q615_SPAC00127G0164	Helix-turn-helix XRE-family like proteins	NA
UHGV-2031116_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2031116_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2031116_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2031116_6	PHROG	phrog_3220	NA	unknown function
UHGV-2031116_6	UniRef90	UniRef90_A0A385AEZ7	NA	NA
UHGV-2031116_6	eggNOG-mapper	1069533.Sinf_0767	NA	NA
UHGV-2031116_6	Pfam	PF09954	NA	DUF2188
UHGV-2031116_6	Structural annotation	PF09954	NA	NA
UHGV-2031116_7	UniRef90	UniRef90_UPI001CBCDE5E	helix-turn-helix domain-containing protein	NA
UHGV-2031116_7	eggNOG-mapper	764299.STRIC_1448	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2031116_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2031116_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2031116_7	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-2031116_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2031116_8	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2031116_8	UniRef90	UniRef90_UPI0009389079	phage antirepressor	NA
UHGV-2031116_8	eggNOG-mapper	1069534.LRC_07110	BRO family, N-terminal domain	NA
UHGV-2031116_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2031116_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2031116_8	COG	COG3617	Prophage antirepressor	NA
UHGV-2031116_8	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2031116_9	PHROG	phrog_904	excisionase	integration and excision
UHGV-2031116_9	UniRef90	UniRef90_A0A0E2Q2P3	Excisionase	NA
UHGV-2031116_9	eggNOG-mapper	1069533.Sinf_0769	NA	NA
UHGV-2031116_9	Structural annotation	PF20063	NA	NA
UHGV-2031116_10	PHROG	phrog_1022	NA	unknown function
UHGV-2031116_11	UniRef90	UniRef90_A0A2C5WHY9	GRAM_POS_ANCHORING domain-containing protein	NA
UHGV-2031116_11	eggNOG-mapper	435842.HMPREF0848_00198	Pilin isopeptide linkage domain protein	NA
UHGV-2031116_11	Pfam	PF17961	Bacterial Ig domain	Big_8
UHGV-2031116_11	Pfam	PF05737	Collagen binding domain	Collagen_bind
UHGV-2031116_11	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-2031116_11	Structural annotation	PF05737, PF17961, NF000535	NA	NA
UHGV-2031116_12	PHROG	phrog_2486	NA	unknown function
UHGV-2031116_12	UniRef90	UniRef90_A0A380JW97	NA	NA
UHGV-2031116_13	PHROG	phrog_2553	NA	unknown function
UHGV-2031116_13	UniRef90	UniRef90_UPI00118251C3	2-hydroxyacyl-CoA dehydratase	NA
UHGV-2031116_14	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2031116_14	UniRef90	UniRef90_UPI0009B7346C	phage recombination protein Bet	NA
UHGV-2031116_14	eggNOG-mapper	372457.A7DYD3_9CAUD	DNA metabolic process	NA
UHGV-2031116_14	Pfam	PF03837	RecT family	RecT
UHGV-2031116_14	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2031116_14	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2031116_15	PHROG	phrog_674	NA	unknown function
UHGV-2031116_15	UniRef90	UniRef90_A0A1V0H7T8	NA	NA
UHGV-2031116_15	eggNOG-mapper	1239381.K4JU67_9CAUD	NA	NA
UHGV-2031116_15	Pfam	PF07083	NA	DUF1351
UHGV-2031116_15	Structural annotation	PF07083	NA	NA
UHGV-2031116_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2031116_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2031116_16	UniRef90	UniRef90_A0A2C5WCV3	Single-stranded DNA-binding protein	NA
UHGV-2031116_16	eggNOG-mapper	264199.stu1753	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2031116_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2031116_16	NCBIFam	NF005580.0	single-stranded DNA-binding protein	NA
UHGV-2031116_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2031116_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2031116_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2031116_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2031116_18	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2031116_18	UniRef90	UniRef90_A0A191KC42	Endodeoxyribonuclease RusA	NA
UHGV-2031116_18	eggNOG-mapper	1123318.KB904586_gene519	NA	NA
UHGV-2031116_20	PHROG	phrog_121	NA	unknown function
UHGV-2031116_20	UniRef90	UniRef90_UPI00191877D3	NA	NA
UHGV-2031116_20	eggNOG-mapper	1095737.HMPREF1110_1213	NA	NA
UHGV-2031116_20	Pfam	PF07852	NA	DUF1642
UHGV-2031116_20	Structural annotation	PF07852	NA	NA
UHGV-2031116_21	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2031116_21	UniRef90	UniRef90_T0TA08	Phage DNA-binding protein	NA
UHGV-2031116_21	eggNOG-mapper	306323.Q56S64_9CAUD	sequence-specific DNA binding	NA
UHGV-2031116_21	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-2031116_22	PHROG	phrog_884	NA	unknown function
UHGV-2031116_22	UniRef90	UniRef90_A0A448A8U8	NA	NA
UHGV-2031116_22	eggNOG-mapper	365659.smi_0433	NA	NA
UHGV-2031116_22	Pfam	PF07116	NA	DUF1372
UHGV-2031116_22	Structural annotation	PF07116	NA	NA
UHGV-2031116_23	PHROG	phrog_2131	NA	unknown function
UHGV-2031116_23	UniRef90	UniRef90_O34053	ORF22	NA
UHGV-2031116_23	eggNOG-mapper	73422.L0P2P5_9CAUD	NA	NA
UHGV-2031116_24	PHROG	phrog_1814	NA	unknown function
UHGV-2031116_24	UniRef90	UniRef90_UPI0019194F7A	NA	NA
UHGV-2031116_24	Pfam	PF07067	NA	DUF1340
UHGV-2031116_24	Structural annotation	PF07067	NA	NA
UHGV-2031116_25	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-2031116_25	UniRef90	UniRef90_O34055	Putative autolysin regulatory protein ArpU	NA
UHGV-2031116_25	eggNOG-mapper	173707.Q938L8_9CAUD	NA	NA
UHGV-2031116_25	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-2031116_25	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-2031116_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2031116_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2031116_26	UniRef90	UniRef90_A0A2I1TQF1	Terminase small subunit	NA
UHGV-2031116_26	eggNOG-mapper	764299.STRIC_2128	Terminase small subunit	NA
UHGV-2031116_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2031116_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2031116_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2031116_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2031116_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2031116_27	UniRef90	UniRef90_A0A2I1TQG8	PBSX family phage terminase large subunit	NA
UHGV-2031116_27	eggNOG-mapper	1069533.Sinf_0783	Phage terminase, large subunit	NA
UHGV-2031116_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2031116_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2031116_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2031116_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2031116_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2031116_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-2031116_28	UniRef90	UniRef90_A0A1F1HBV3	Phage portal protein	NA
UHGV-2031116_28	eggNOG-mapper	1069533.Sinf_0784	Phage portal protein, SPP1 family	NA
UHGV-2031116_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2031116_28	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2031116_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2031116_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2031116_29	UniRef90	UniRef90_A0A2I1TQJ9	Phage head morphogenesis protein	NA
UHGV-2031116_29	eggNOG-mapper	413066.A1EAE3_9CAUD	Phage Mu protein F like protein	NA
UHGV-2031116_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2031116_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2031116_29	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-2031116_30	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2031116_30	UniRef90	UniRef90_A0A2I1TQI6	NA	NA
UHGV-2031116_30	Pfam	PF14265	NA	DUF4355
UHGV-2031116_30	Structural annotation	PF14265	NA	NA
UHGV-2031116_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-2031116_31	UniRef90	UniRef90_A0A8F1YU86	Phage major capsid protein	NA
UHGV-2031116_31	eggNOG-mapper	1069533.Sinf_0788	Phage capsid family	NA
UHGV-2031116_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2031116_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2031116_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2031116_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2031116_32	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-2031116_32	UniRef90	UniRef90_A0A1F1HAH8	HeH domain-containing protein	NA
UHGV-2031116_32	eggNOG-mapper	279808.SH2353	Rho termination factor, N-terminal domain	NA
UHGV-2031116_32	Pfam	PF12949	HeH/LEM domain	HeH
UHGV-2031116_33	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2031116_33	UniRef90	UniRef90_A0A2I1TQE9	DNA-packaging protein	NA
UHGV-2031116_33	eggNOG-mapper	413066.A1EAF1_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-2031116_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2031116_33	Structural annotation	PF05135	NA	NA
UHGV-2031116_34	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2031116_34	eggNOG-mapper	1069533.Sinf_0791	NA	NA
UHGV-2031116_34	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-2031116_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2031116_35	UniRef90	UniRef90_UPI00066A36B6	HK97 gp10 family phage protein	NA
UHGV-2031116_35	eggNOG-mapper	883081.HMPREF9698_01114	NA	NA
UHGV-2031116_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2031116_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2031116_35	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2031116_36	PHROG	phrog_176	tail terminator	connector
UHGV-2031116_36	UniRef90	UniRef90_UPI0005C5DBE6	NA	NA
UHGV-2031116_36	eggNOG-mapper	764299.STRIC_2144	NA	NA
UHGV-2031116_36	Structural annotation	PF11367	NA	NA
UHGV-2031116_37	PHROG	phrog_238	major tail protein	tail
UHGV-2031116_37	UniRef90	UniRef90_A0A1F1HA76	Phage tail protein	NA
UHGV-2031116_37	eggNOG-mapper	764299.STRIC_2145	Phage tail tube protein	NA
UHGV-2031116_37	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2031116_37	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2031116_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2031116_38	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2031116_38	UniRef90	UniRef90_A0A4V0ES11	NA	NA
UHGV-2031116_38	eggNOG-mapper	1069533.Sinf_0794	Phage tail assembly chaperone protein, TAC	NA
UHGV-2031116_38	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2031116_38	Structural annotation	PF12363	NA	NA
UHGV-2031116_39	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-2031116_39	UniRef90	UniRef90_A0A4V0ERZ7	NA	NA
UHGV-2031116_39	eggNOG-mapper	883081.HMPREF9698_01110	NA	NA
UHGV-2031116_40	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2031116_40	UniRef90	UniRef90_A0A4V0ET42	NA	NA
UHGV-2031116_40	eggNOG-mapper	413066.A1EAB0_9CAUD	peptidoglycan catabolic process	NA
UHGV-2031116_40	Structural annotation	PF20155	NA	NA
UHGV-2031116_41	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2031116_41	UniRef90	UniRef90_A0A4V0ERM4	Phage tail protein	NA
UHGV-2031116_41	eggNOG-mapper	413066.A1EAB1_9CAUD	Phage tail protein	NA
UHGV-2031116_41	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2031116_41	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2031116_41	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2031116_42	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2031116_42	PHROG	phrog_1330	tail protein	tail
UHGV-2031116_42	UniRef90	UniRef90_UPI0012BBF307	phage tail protein	NA
UHGV-2031116_42	eggNOG-mapper	413066.A1EAB2_9CAUD	peptidoglycan catabolic process	NA
UHGV-2031116_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2031116_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2031116_42	Structural annotation	PF14594, PF01105, TIGR01665, NF033675, COG4926	NA	NA
UHGV-2031116_44	PHROG	phrog_1554	NA	unknown function
UHGV-2031116_44	UniRef90	UniRef90_A0A7X2X378	NA	NA
UHGV-2031116_44	eggNOG-mapper	1035189.HMPREF9954_1920	NA	NA
UHGV-2031116_44	Structural annotation	PF07104	NA	NA
UHGV-2031116_45	PHROG	phrog_199	holin	lysis
UHGV-2031116_45	UniRef90	UniRef90_F8HGP0	Putative holin	NA
UHGV-2031116_45	eggNOG-mapper	1051631.F8HGP0_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-2031116_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2031116_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2031116_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2031116_46	PHROG	phrog_962	holin	lysis
UHGV-2031116_46	UniRef90	UniRef90_O34081	ORF50	NA
UHGV-2031116_46	eggNOG-mapper	1282664.H354_07765	COG5546 Small integral membrane protein	NA
UHGV-2031116_46	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2031116_46	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2031116_46	COG	COG5546	NA	NA
UHGV-2031116_46	Structural annotation	COG5546	NA	NA
UHGV-2031116_47	PHROG	phrog_6487	NA	unknown function
UHGV-2031116_47	UniRef90	UniRef90_A0A3S4LRZ3	NA	NA
UHGV-2031116_47	eggNOG-mapper	999425.HMPREF9186_02053	NA	NA
UHGV-2031116_47	Structural annotation	PF10651, NF041178, COG5456	NA	NA
UHGV-2031116_48	PHROG	phrog_4757	NA	unknown function
UHGV-2031116_48	eggNOG-mapper	546264.NEIFLAOT_01722	overlaps another CDS with the same product name	NA
UHGV-2031116_50	KOfam	K07273	acm; lysozyme	NA
UHGV-2031116_50	PHROG	phrog_8577	endolysin	lysis
UHGV-2031116_50	UniRef90	UniRef90_A0A3S5X678	Lysozyme	NA
UHGV-2031116_50	eggNOG-mapper	372457.A7DYC5_9CAUD	peptidoglycan catabolic process	NA
UHGV-2031116_50	Pfam	PF05257	CHAP domain	CHAP
UHGV-2031116_50	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2031116_50	Structural annotation	PF01183, PF05257, COG3942	NA	NA
UHGV-2031116_51	UniRef90	UniRef90_V8LYN5	Isoleucyl-tRNA synthetase	NA
UHGV-2031116_51	eggNOG-mapper	1046629.Ssal_01520	NA	NA