UHGV-2031686

Genome information

Genome length 28,620 bps

CDS count 39

Completeness 66.30% (medium-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-2031686
vOTU ID	vOTU-041537
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029130\|Ga0168772_100268\|provirus_30567_59186
BioSample	SAMEA2737753
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-4.04
Jumbo phage	No

Genome content
Genome length	28,620 bps
GC content	52.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	85.87%
Average CDS length	632.92 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2031686_2	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-2031686_3	Structural annotation	PF12510	NA	NA
UHGV-2031686_4	PHROG	phrog_20016	NA	unknown function
UHGV-2031686_4	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2031686_4	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-2031686_5	PHROG	phrog_16490	NA	unknown function
UHGV-2031686_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-2031686_6	PHROG	phrog_22984	NA	unknown function
UHGV-2031686_7	PHROG	phrog_21718	NA	unknown function
UHGV-2031686_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-2031686_8	PHROG	phrog_3754	NA	unknown function
UHGV-2031686_8	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2031686_9	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-2031686_9	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-2031686_9	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-2031686_10	PHROG	phrog_13256	NA	unknown function
UHGV-2031686_10	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-2031686_11	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-2031686_11	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-2031686_12	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-2031686_12	PHROG	phrog_7698	endolysin	lysis
UHGV-2031686_12	UniRef90	UniRef90_A0A1C5V282	Exo-glucosaminidase lytG	NA
UHGV-2031686_12	eggNOG-mapper	877411.JMMA01000002_gene2384	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2031686_12	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2031686_12	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-2031686_12	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2031686_12	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-2031686_13	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-2031686_13	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2031686_14	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-2031686_15	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-2031686_15	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-2031686_15	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-2031686_16	PHROG	phrog_13046	NA	unknown function
UHGV-2031686_16	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-2031686_16	Structural annotation	PF20387	NA	NA
UHGV-2031686_17	PHROG	phrog_156	portal protein	head and packaging
UHGV-2031686_17	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-2031686_17	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2031686_19	PHROG	phrog_371	major head protein	head and packaging
UHGV-2031686_19	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-2031686_19	eggNOG-mapper	1519439.JPJG01000060_gene1890	NA	NA
UHGV-2031686_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2031686_20	PHROG	phrog_35275	NA	unknown function
UHGV-2031686_20	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-2031686_22	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-2031686_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2031686_22	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-2031686_22	eggNOG-mapper	1408437.JNJN01000002_gene1397	Phage terminase large subunit	NA
UHGV-2031686_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-2031686_22	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-2031686_23	PHROG	phrog_2412	NA	unknown function
UHGV-2031686_24	UniRef90	UniRef90_UPI0018758D33	NA	NA
UHGV-2031686_24	eggNOG-mapper	693746.OBV_01760	NA	NA
UHGV-2031686_24	Pfam	PF08681	NA	DUF1778
UHGV-2031686_24	Structural annotation	PF03869, NF040976, COG4453	NA	NA
UHGV-2031686_25	PHROG	phrog_15863	NA	unknown function
UHGV-2031686_25	UniRef90	UniRef90_UPI0018766E78	J domain-containing protein	NA
UHGV-2031686_25	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-2031686_25	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-2031686_26	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-2031686_26	UniRef90	UniRef90_UPI0010565CFE	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2031686_26	eggNOG-mapper	657322.FPR_26770	NA	NA
UHGV-2031686_26	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-2031686_29	KOfam	K14059	int; integrase	NA
UHGV-2031686_29	PHROG	phrog_1	integrase	integration and excision
UHGV-2031686_29	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-2031686_29	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-2031686_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2031686_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2031686_29	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2031686_32	UniRef90	UniRef90_A0A1M5ZHX2	HTH cro/C1-type domain-containing protein	NA
UHGV-2031686_32	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-2031686_32	Structural annotation	PF01381, MF_00535, NF007257, COG3655	NA	NA
UHGV-2031686_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2031686_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2031686_33	UniRef90	UniRef90_A0A1Y3ZNM0	HTH cro/C1-type domain-containing protein	NA
UHGV-2031686_33	eggNOG-mapper	693746.OBV_25500	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2031686_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2031686_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2031686_33	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2031686_37	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-2031686_37	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-2031686_39	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-2031686_39	PHROG	phrog_4433	NA	unknown function
UHGV-2031686_39	UniRef90	UniRef90_UPI00045B9709	collagen-like protein	NA
UHGV-2031686_39	eggNOG-mapper	767434.Fraau_1460	regulation of DNA-templated transcription, elongation	NA
UHGV-2031686_39	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2031686_39	COG	COG5164	Transcription elongation factor SPT5	NA