UHGV-2031778

Genome information

Genome length 33,909 bps

CDS count 46

Completeness 94.22% (high-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-2031778
vOTU ID	vOTU-008688
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029210\|Ga0168823_100652
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.82
Jumbo phage	No

Genome content
Genome length	33,909 bps
GC content	37.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.35%
Average CDS length	698.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2031778_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2031778_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2031778_3	UniRef90	UniRef90_A0A1C6BWN2	Single-stranded DNA-binding protein	NA
UHGV-2031778_3	eggNOG-mapper	1160721.RBI_II00278	Single-stranded DNA-binding protein	NA
UHGV-2031778_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2031778_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2031778_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2031778_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2031778_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2031778_4	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2031778_4	eggNOG-mapper	1234679.BN424_3315	NA	NA
UHGV-2031778_4	Pfam	PF05568	African swine fever virus J13L protein	ASFV_J13L
UHGV-2031778_4	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2031778_4	Structural annotation	PF03428, MF_01909, TIGR04176, COG5625	NA	NA
UHGV-2031778_5	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2031778_5	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2031778_5	UniRef90	UniRef90_R6MMI6	DNA helicase	NA
UHGV-2031778_5	eggNOG-mapper	1391646.AVSU01000021_gene3273	Participates in initiation and elongation during chromosome replication	NA
UHGV-2031778_5	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2031778_5	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2031778_5	COG	COG0305	Replicative DNA helicase	NA
UHGV-2031778_5	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2031778_6	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-2031778_6	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-2031778_6	UniRef90	UniRef90_A0A1C6BWE0	Beta sliding clamp	NA
UHGV-2031778_6	eggNOG-mapper	1415774.U728_2521	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-2031778_6	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-2031778_6	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-2031778_6	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-2031778_6	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-2031778_6	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-2031778_7	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2031778_7	Structural annotation	PF13384, COG2771	NA	NA
UHGV-2031778_8	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2031778_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2031778_8	UniRef90	UniRef90_R6MJX5	XRE family transcriptional regulator	NA
UHGV-2031778_8	eggNOG-mapper	997350.HMPREF9129_1691	PFAM Helix-turn-helix	NA
UHGV-2031778_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2031778_8	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2031778_8	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-2031778_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2031778_8	Structural annotation	PF01381, PF13744, MF_00535, TIGR02607, NF041677, COG1476, COG1426	NA	NA
UHGV-2031778_10	PHROG	phrog_421	NA	unknown function
UHGV-2031778_10	UniRef90	UniRef90_A0A3R7BR33	NA	NA
UHGV-2031778_10	eggNOG-mapper	1235792.C808_00626	NA	NA
UHGV-2031778_11	PHROG	phrog_7711	NA	unknown function
UHGV-2031778_11	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-2031778_11	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-2031778_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2031778_13	UniRef90	UniRef90_C6JJP2	Sigma70_r4 domain-containing protein	NA
UHGV-2031778_13	eggNOG-mapper	883112.HMPREF9707_01621	NA	NA
UHGV-2031778_13	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2031778_14	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2031778_14	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-2031778_14	UniRef90	UniRef90_A0A1C6E4Y4	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase	NA
UHGV-2031778_14	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-2031778_14	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-2031778_14	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2031778_14	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2031778_14	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-2031778_16	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2031778_16	PHROG	phrog_216	integrase	integration and excision
UHGV-2031778_16	UniRef90	UniRef90_R6M725	Integrase family protein	NA
UHGV-2031778_16	eggNOG-mapper	1121324.CLIT_8c00830	integrase family	NA
UHGV-2031778_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2031778_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2031778_16	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-2031778_17	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2031778_17	UniRef90	UniRef90_R6NC05	Holin protein	NA
UHGV-2031778_17	eggNOG-mapper	1121324.CLIT_8c00820	HNH endonuclease	NA
UHGV-2031778_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2031778_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2031778_17	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2031778_18	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2031778_18	UniRef90	UniRef90_A0A7X5KSV1	Phage terminase small subunit P27 family	NA
UHGV-2031778_18	eggNOG-mapper	1286171.EAL2_c11020	Phage terminase, small subunit	NA
UHGV-2031778_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2031778_18	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2031778_18	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2031778_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2031778_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2031778_19	UniRef90	UniRef90_R6NC11	Putative phage terminase large subunit	NA
UHGV-2031778_19	eggNOG-mapper	1121324.CLIT_8c00800	Phage Terminase	NA
UHGV-2031778_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2031778_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2031778_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2031778_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2031778_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-2031778_20	UniRef90	UniRef90_A0A3D0EBW5	Phage portal protein	NA
UHGV-2031778_20	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-2031778_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2031778_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2031778_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2031778_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2031778_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2031778_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2031778_21	UniRef90	UniRef90_A0A1C6BVB4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2031778_21	eggNOG-mapper	1567013.A0A0A7RTN2_9CAUD	Clp protease	NA
UHGV-2031778_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2031778_21	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2031778_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-2031778_22	UniRef90	UniRef90_R6MMT6	Phage major capsid protein HK97 family	NA
UHGV-2031778_22	eggNOG-mapper	742738.HMPREF9460_04071	phage major capsid protein, HK97 family	NA
UHGV-2031778_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2031778_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2031778_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2031778_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2031778_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2031778_23	UniRef90	UniRef90_A0A7X5KT30	Phage gp6-like head-tail connector protein	NA
UHGV-2031778_23	eggNOG-mapper	634956.Geoth_0791	Phage gp6-like head-tail connector protein	NA
UHGV-2031778_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2031778_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2031778_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2031778_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-2031778_24	UniRef90	UniRef90_R6MQB9	Phage head-tail adaptor	NA
UHGV-2031778_24	eggNOG-mapper	471881.PROPEN_00050	Phage head-tail joining protein	NA
UHGV-2031778_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2031778_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2031778_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2031778_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2031778_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2031778_25	UniRef90	UniRef90_A0A7X5KT23	HK97 gp10 family phage protein	NA
UHGV-2031778_25	eggNOG-mapper	500633.CLOHIR_00370	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2031778_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2031778_25	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2031778_26	PHROG	phrog_525	NA	unknown function
UHGV-2031778_26	UniRef90	UniRef90_R6MXG5	NA	NA
UHGV-2031778_26	Pfam	PF20765	NA	DUF6838
UHGV-2031778_26	Structural annotation	PF20765, COG3167	NA	NA
UHGV-2031778_27	PHROG	phrog_1480	tail sheath	tail
UHGV-2031778_27	UniRef90	UniRef90_R6MMU4	Phage-like element pbsx protein XkdK	NA
UHGV-2031778_27	eggNOG-mapper	1449126.JQKL01000051_gene3164	Phage tail sheath protein subtilisin-like domain	NA
UHGV-2031778_27	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2031778_27	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2031778_27	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2031778_28	PHROG	phrog_365	tail protein	tail
UHGV-2031778_28	UniRef90	UniRef90_A0A1C6BU46	Phage-like element PBSX protein xkdM	NA
UHGV-2031778_28	eggNOG-mapper	1294142.CINTURNW_0298	Phage tail tube protein	NA
UHGV-2031778_28	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2031778_28	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2031778_29	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-2031778_29	UniRef90	UniRef90_R6MRE8	Phage XkdN-like protein	NA
UHGV-2031778_29	eggNOG-mapper	1449126.JQKL01000051_gene3162	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2031778_29	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2031778_29	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-2031778_31	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2031778_31	UniRef90	UniRef90_A0A1C6BU41	Phage-related minor tail protein	NA
UHGV-2031778_31	eggNOG-mapper	374526.A5GYM8_9CAUD	NA	NA
UHGV-2031778_31	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-2031778_31	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2031778_32	PHROG	phrog_23201	NA	unknown function
UHGV-2031778_32	UniRef90	UniRef90_R6M2K3	SLH domain-containing protein	NA
UHGV-2031778_32	eggNOG-mapper	97138.C820_00738	Ami_2	NA
UHGV-2031778_32	Pfam	PF00395	S-layer homology domain	SLH
UHGV-2031778_32	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2031778_33	PHROG	phrog_400	tail protein	tail
UHGV-2031778_33	UniRef90	UniRef90_R6MRC8	Peptidase C51 domain-containing protein	NA
UHGV-2031778_33	eggNOG-mapper	469617.FUAG_00848	Late control gene D protein	NA
UHGV-2031778_33	Pfam	PF05257	CHAP domain	CHAP
UHGV-2031778_33	COG	COG3500	NA	NA
UHGV-2031778_33	Structural annotation	PF14594, NF033848, NF033742, COG4379	NA	NA
UHGV-2031778_34	Pfam	PF10844	NA	DUF2577
UHGV-2031778_34	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-2031778_35	PHROG	phrog_120	baseplate protein	tail
UHGV-2031778_35	UniRef90	UniRef90_A0A416D4N7	NA	NA
UHGV-2031778_35	eggNOG-mapper	632245.CLP_2904	NA	NA
UHGV-2031778_35	Pfam	PF10934	NA	DUF2634
UHGV-2031778_35	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2031778_35	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-2031778_36	PHROG	phrog_6	baseplate protein	tail
UHGV-2031778_36	UniRef90	UniRef90_A0A416D4L9	Baseplate j family protein	NA
UHGV-2031778_36	eggNOG-mapper	1449126.JQKL01000051_gene3155	Baseplate J-like protein	NA
UHGV-2031778_36	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2031778_36	COG	COG3299	NA	NA
UHGV-2031778_36	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2031778_37	PHROG	phrog_521	tail protein	tail
UHGV-2031778_37	UniRef90	UniRef90_A0A373QEU2	NA	NA
UHGV-2031778_37	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2031778_37	COG	COG3778	NA	NA
UHGV-2031778_37	Structural annotation	PF10076, TIGR01634, COG3778	NA	NA
UHGV-2031778_38	PHROG	phrog_7037	tail fiber protein	tail
UHGV-2031778_38	UniRef90	UniRef90_UPI00188B6258	phage tail protein	NA
UHGV-2031778_38	eggNOG-mapper	1589751.A0A0C5AEQ0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2031778_38	Structural annotation	PF12571	NA	NA
UHGV-2031778_39	PHROG	phrog_21765	NA	unknown function
UHGV-2031778_39	UniRef90	UniRef90_A0A1C6CU08	Pectate_lyase_3 domain-containing protein	NA
UHGV-2031778_39	eggNOG-mapper	1121866.AUGK01000006_gene890	Phage minor structural protein	NA
UHGV-2031778_39	COG	COG4926	Phage-related protein	NA
UHGV-2031778_39	Structural annotation	PF14592, NF041899	NA	NA
UHGV-2031778_41	PHROG	phrog_2310	NA	unknown function
UHGV-2031778_41	eggNOG-mapper	931626.Awo_c34950	NA	NA
UHGV-2031778_42	PHROG	phrog_199	holin	lysis
UHGV-2031778_42	UniRef90	UniRef90_A0A373Q192	Holin	NA
UHGV-2031778_42	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-2031778_42	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2031778_42	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2031778_42	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2031778_42	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2031778_43	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2031778_43	PHROG	phrog_670	endolysin	lysis
UHGV-2031778_43	UniRef90	UniRef90_A0A1C6CVB7	N-acetylmuramoyl-L-alanine amidase AmiD	NA
UHGV-2031778_43	eggNOG-mapper	97138.C820_00251	Ami_2	NA
UHGV-2031778_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2031778_43	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2031778_43	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2031778_45	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2031778_45	UniRef90	UniRef90_A0A1C6BSL4	Helix-turn-helix domain	NA
UHGV-2031778_45	eggNOG-mapper	1304866.K413DRAFT_0788	Helix-turn-helix XRE-family like proteins	NA
UHGV-2031778_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2031778_46	eggNOG-mapper	1297617.JPJD01000045_gene2145	NA	NA