UHGV-2032007

Genome information

Genome length 37,376 bps

CDS count 52

Completeness 81.05% (medium-quality)

geNomad score 0.9526

Prediction confidence Confident

Genome information
Genome ID	UHGV-2032007
vOTU ID	vOTU-029964
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029127\|Ga0168774_100294\|provirus_31848_69223
BioSample	SAMEA2737755
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9526
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.82
Jumbo phage	No

Genome content
Genome length	37,376 bps
GC content	29.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.52%
Average CDS length	668.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2032007_1	KOfam	K14059	int; integrase	NA
UHGV-2032007_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2032007_1	UniRef90	UniRef90_UPI001D090FC7	site-specific integrase	NA
UHGV-2032007_1	eggNOG-mapper	1589749.A0A0B5A7B7_9CAUD	Phage integrase family	NA
UHGV-2032007_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2032007_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2032007_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2032007_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2032007_3	PHROG	phrog_2232	NA	unknown function
UHGV-2032007_3	UniRef90	UniRef90_A0A848EW21	NA	NA
UHGV-2032007_3	eggNOG-mapper	1069533.Sinf_0891	NA	NA
UHGV-2032007_3	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-2032007_3	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-2032007_4	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2032007_4	UniRef90	UniRef90_A0A4Y7S4J4	Radical SAM superfamily protein	NA
UHGV-2032007_4	eggNOG-mapper	931626.Awo_c14350	radical SAM domain protein	NA
UHGV-2032007_4	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2032007_5	PHROG	phrog_9592	NA	unknown function
UHGV-2032007_5	eggNOG-mapper	931626.Awo_c14360	NA	NA
UHGV-2032007_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2032007_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2032007_6	UniRef90	UniRef90_UPI001EF5C6DC	helix-turn-helix domain-containing protein	NA
UHGV-2032007_6	eggNOG-mapper	1391647.AVSV01000039_gene1077	Helix-turn-helix XRE-family like proteins	NA
UHGV-2032007_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2032007_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2032007_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2032007_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2032007_7	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2032007_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2032007_7	UniRef90	UniRef90_UPI00195A0A22	helix-turn-helix domain-containing protein	NA
UHGV-2032007_7	eggNOG-mapper	862517.HMPREF9225_1674	Helix-turn-helix XRE-family like proteins	NA
UHGV-2032007_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2032007_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2032007_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2032007_8	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2032007_8	UniRef90	UniRef90_UPI001D088355	helix-turn-helix transcriptional regulator	NA
UHGV-2032007_8	eggNOG-mapper	536233.CLO_1403	Helix-turn-helix XRE-family like proteins	NA
UHGV-2032007_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2032007_8	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2032007_8	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-2032007_12	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2032007_12	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-2032007_12	UniRef90	UniRef90_UPI001D08DC67	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-2032007_12	eggNOG-mapper	632245.CLP_1613	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-2032007_12	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2032007_12	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2032007_12	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2032007_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2032007_12	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-2032007_13	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2032007_13	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2032007_13	UniRef90	UniRef90_UPI001D079CA7	replicative DNA helicase	NA
UHGV-2032007_13	eggNOG-mapper	1122217.KB899575_gene1971	Participates in initiation and elongation during chromosome replication	NA
UHGV-2032007_13	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2032007_13	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2032007_13	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-2032007_13	COG	COG0305	Replicative DNA helicase	NA
UHGV-2032007_13	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2032007_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2032007_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2032007_18	UniRef90	UniRef90_UPI000E49F46F	single-stranded DNA-binding protein	NA
UHGV-2032007_18	eggNOG-mapper	1122217.KB899575_gene2011	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2032007_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2032007_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2032007_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2032007_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2032007_18	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2032007_20	UniRef90	UniRef90_A0A450CVA7	CopG family transcriptional regulator	NA
UHGV-2032007_20	eggNOG-mapper	469604.HMPREF0946_00961	NA	NA
UHGV-2032007_20	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-2032007_21	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-2032007_21	UniRef90	UniRef90_UPI001D076352	Rha family transcriptional regulator	NA
UHGV-2032007_21	eggNOG-mapper	552396.HMPREF0863_00753	AntA/AntB antirepressor	NA
UHGV-2032007_21	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2032007_21	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2032007_21	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2032007_21	Structural annotation	PF09669, PF10543, TIGR02681, COG3646	NA	NA
UHGV-2032007_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2032007_23	UniRef90	UniRef90_UPI00195CFC41	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2032007_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2032007_23	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2032007_25	UniRef90	UniRef90_A0A8B2QNX6	HNH domain-containing protein	NA
UHGV-2032007_25	eggNOG-mapper	186497.PF0900	endonuclease	NA
UHGV-2032007_26	Structural annotation	PF11570, NF038178, COG1842	NA	NA
UHGV-2032007_27	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-2032007_27	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-2032007_27	UniRef90	UniRef90_A0A0U9HMP1	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2032007_27	eggNOG-mapper	1262914.BN533_01938	NA	NA
UHGV-2032007_27	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2032007_27	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-2032007_28	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-2032007_28	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-2032007_28	UniRef90	UniRef90_UPI000F0C09AB	phage terminase large subunit family protein	NA
UHGV-2032007_28	eggNOG-mapper	1280706.AUJE01000010_gene653	Phage terminase large subunit (GpA)	NA
UHGV-2032007_28	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-2032007_28	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-2032007_28	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-2032007_28	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-2032007_28	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-2032007_29	PHROG	phrog_118	head-tail adaptor	connector
UHGV-2032007_29	UniRef90	UniRef90_UPI00073EF5B2	NA	NA
UHGV-2032007_29	eggNOG-mapper	1262914.BN533_00292	NA	NA
UHGV-2032007_29	Pfam	PF19645	NA	DUF6148
UHGV-2032007_29	Structural annotation	PF19645	NA	NA
UHGV-2032007_30	PHROG	phrog_21	portal protein	head and packaging
UHGV-2032007_30	UniRef90	UniRef90_R6I758	Phage portal protein	NA
UHGV-2032007_30	eggNOG-mapper	1262914.BN533_00293	Phage portal protein	NA
UHGV-2032007_30	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-2032007_30	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-2032007_30	COG	COG5511	Phage capsid protein	NA
UHGV-2032007_30	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-2032007_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2032007_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2032007_31	UniRef90	UniRef90_UPI0018C71DAD	Clp protease ClpP	NA
UHGV-2032007_31	eggNOG-mapper	936573.HMPREF1147_1718	Clp protease	NA
UHGV-2032007_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2032007_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2032007_31	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-2032007_32	PHROG	phrog_49	head decoration	head and packaging
UHGV-2032007_32	UniRef90	UniRef90_UPI000F0CF163	head decoration protein	NA
UHGV-2032007_32	eggNOG-mapper	936573.HMPREF1147_1719	Bacteriophage lambda head decoration protein D	NA
UHGV-2032007_32	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-2032007_32	Structural annotation	PF02924	NA	NA
UHGV-2032007_33	PHROG	phrog_29	major head protein	head and packaging
UHGV-2032007_33	UniRef90	UniRef90_UPI000F0CF09A	major capsid protein	NA
UHGV-2032007_33	eggNOG-mapper	936573.HMPREF1147_1720	Phage major capsid protein E	NA
UHGV-2032007_33	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2032007_33	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-2032007_35	PHROG	phrog_2551	minor tail protein	tail
UHGV-2032007_35	eggNOG-mapper	1514668.JOOA01000001_gene202	NA	NA
UHGV-2032007_35	Structural annotation	PF05354, TIGR01563	NA	NA
UHGV-2032007_36	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-2032007_36	UniRef90	UniRef90_UPI0018CF00C8	phage tail protein	NA
UHGV-2032007_36	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-2032007_36	Structural annotation	PF06763	NA	NA
UHGV-2032007_37	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-2032007_37	eggNOG-mapper	1280706.AUJE01000010_gene663	NA	NA
UHGV-2032007_37	Structural annotation	PF08873, COG5003	NA	NA
UHGV-2032007_38	PHROG	phrog_4089	NA	unknown function
UHGV-2032007_39	KOfam	K06907	NA	NA
UHGV-2032007_39	PHROG	phrog_23	tail sheath	tail
UHGV-2032007_39	UniRef90	UniRef90_A0A0B2K5H2	Phage tail protein	NA
UHGV-2032007_39	eggNOG-mapper	1280706.AUJE01000010_gene665	COG3497 Phage tail sheath protein FI	NA
UHGV-2032007_39	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-2032007_39	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-2032007_40	KOfam	K06908	NA	NA
UHGV-2032007_40	PHROG	phrog_55	head closure	connector
UHGV-2032007_40	UniRef90	UniRef90_UPI0018C47A07	phage major tail tube protein	NA
UHGV-2032007_40	eggNOG-mapper	1280706.AUJE01000010_gene666	tail tube protein	NA
UHGV-2032007_40	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-2032007_40	COG	COG3498	Phage tail tube protein FII	NA
UHGV-2032007_40	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-2032007_43	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-2032007_43	UniRef90	UniRef90_UPI0003F5F321	phage tail tape measure protein	NA
UHGV-2032007_43	eggNOG-mapper	936573.HMPREF1147_1730	Phage-related minor tail protein	NA
UHGV-2032007_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2032007_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2032007_43	COG	COG5283	Phage-related tail protein	NA
UHGV-2032007_44	PHROG	phrog_46	tail protein	tail
UHGV-2032007_44	UniRef90	UniRef90_A0A348AJ10	Phage Tail Protein X	NA
UHGV-2032007_44	eggNOG-mapper	1232443.BAIA02000135_gene1416	Phage Tail Protein X	NA
UHGV-2032007_44	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-2032007_45	KOfam	K06905	NA	NA
UHGV-2032007_45	PHROG	phrog_52	tail protein	tail
UHGV-2032007_45	UniRef90	UniRef90_J4UR03	Phage late control protein D protein	NA
UHGV-2032007_45	eggNOG-mapper	1280706.AUJE01000010_gene671	COG3500 Phage protein D	NA
UHGV-2032007_45	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-2032007_45	COG	COG3500	NA	NA
UHGV-2032007_45	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-2032007_46	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-2032007_46	UniRef90	UniRef90_UPI0018C4C5FA	phage baseplate assembly protein V	NA
UHGV-2032007_46	eggNOG-mapper	526218.Sterm_0929	Type VI secretion system, phage-baseplate injector	NA
UHGV-2032007_46	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-2032007_47	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-2032007_47	UniRef90	UniRef90_A0A1M6GFE9	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion	NA
UHGV-2032007_47	eggNOG-mapper	546271.Selsp_1317	PAAR motif	NA
UHGV-2032007_47	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-2032007_47	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-2032007_48	PHROG	phrog_76	tail protein	tail
UHGV-2032007_48	UniRef90	UniRef90_UPI0006900F59	phage tail protein	NA
UHGV-2032007_48	eggNOG-mapper	349161.Dred_1218	Phage P2 GpU	NA
UHGV-2032007_48	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-2032007_48	COG	COG3499	NA	NA
UHGV-2032007_48	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-2032007_49	KOfam	K11905	K11905; type VI secretion system protein	NA
UHGV-2032007_49	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-2032007_49	UniRef90	UniRef90_UPI0018C585E5	GPW/gp25 family protein	NA
UHGV-2032007_49	eggNOG-mapper	1280706.AUJE01000010_gene675	GPW Gp25 family protein	NA
UHGV-2032007_49	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-2032007_49	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2032007_49	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-2032007_50	PHROG	phrog_6	baseplate protein	tail
UHGV-2032007_50	UniRef90	UniRef90_A0A2A2IKV6	Baseplate protein	NA
UHGV-2032007_50	eggNOG-mapper	1122917.KB899659_gene6074	Baseplate J-like protein	NA
UHGV-2032007_50	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2032007_50	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-2032007_50	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-2032007_51	PHROG	phrog_14404	baseplate protein	tail
UHGV-2032007_51	UniRef90	UniRef90_A0A2A2IJZ7	Phage tail protein I	NA
UHGV-2032007_51	eggNOG-mapper	927704.SELR_16640	Phage tail protein (Tail_P2_I)	NA
UHGV-2032007_51	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-2032007_51	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-2032007_51	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2032007_52	PHROG	phrog_7037	tail fiber protein	tail
UHGV-2032007_52	UniRef90	UniRef90_UPI00195EB260	phage tail protein	NA
UHGV-2032007_52	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2032007_52	Structural annotation	PF12571	NA	NA