UHGV-2032386

Genome information

Genome length 37,637 bps

CDS count 50

Completeness 85.21% (medium-quality)

geNomad score 0.9693

Prediction confidence Confident

Genome information
Genome ID	UHGV-2032386
vOTU ID	vOTU-033518
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029211\|Ga0168693_100200\|provirus_19092_56728
BioSample	SAMEA2737674
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9693
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.74
Jumbo phage	No

Genome content
Genome length	37,637 bps
GC content	57.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.55%
Average CDS length	691.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2032386_1	KOfam	K14059	int; integrase	NA
UHGV-2032386_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2032386_1	UniRef90	UniRef90_A0A316RZQ6	Tyr recombinase domain-containing protein	NA
UHGV-2032386_1	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-2032386_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2032386_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2032386_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-2032386_2	UniRef90	UniRef90_UPI0011064C88	endonuclease NucS	NA
UHGV-2032386_2	eggNOG-mapper	476272.RUMHYD_01370	Cleaves both 3' and 5' ssDNA extremities of branched DNA structures	NA
UHGV-2032386_2	Pfam	PF18899	NA	DUF5655
UHGV-2032386_2	COG	COG1637	Endonuclease NucS, RecB family	NA
UHGV-2032386_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2032386_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2032386_3	UniRef90	UniRef90_UPI001C021C25	helix-turn-helix domain-containing protein	NA
UHGV-2032386_3	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-2032386_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2032386_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2032386_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2032386_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2032386_4	UniRef90	UniRef90_UPI001C11E9E5	helix-turn-helix domain-containing protein	NA
UHGV-2032386_4	eggNOG-mapper	718252.FP2_01130	NA	NA
UHGV-2032386_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2032386_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2032386_5	eggNOG-mapper	445972.ANACOL_01800	NA	NA
UHGV-2032386_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2032386_5	Structural annotation	PF05339, NF041677, COG3655	NA	NA
UHGV-2032386_8	PHROG	phrog_18562	NA	unknown function
UHGV-2032386_9	Structural annotation	PF01157, MF_01354, NF002745, COG2139	NA	NA
UHGV-2032386_10	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2032386_10	UniRef90	UniRef90_A0A367GI90	NA	NA
UHGV-2032386_10	eggNOG-mapper	1408437.JNJN01000081_gene1518	NA	NA
UHGV-2032386_10	Pfam	PF10926	NA	DUF2800
UHGV-2032386_10	COG	COG2887	RecB family exonuclease	NA
UHGV-2032386_10	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2032386_12	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2032386_12	UniRef90	UniRef90_A0A367GK15	NA	NA
UHGV-2032386_12	eggNOG-mapper	1451189.CFAL_09815	NA	NA
UHGV-2032386_12	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2032386_12	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2032386_13	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2032386_13	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2032386_13	UniRef90	UniRef90_A0A367GJN4	POLAc domain-containing protein	NA
UHGV-2032386_13	eggNOG-mapper	693746.OBV_43170	DNA polymerase	NA
UHGV-2032386_13	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2032386_13	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2032386_13	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2032386_14	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-2032386_14	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-2032386_17	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2032386_17	UniRef90	UniRef90_A0A367GI49	Virulence-associated protein E	NA
UHGV-2032386_17	eggNOG-mapper	1120971.AUCA01000043_gene1172	Virulence-associated protein E	NA
UHGV-2032386_17	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2032386_17	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2032386_17	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2032386_18	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2032386_18	UniRef90	UniRef90_UPI0018F1F23F	VRR-NUC domain-containing protein	NA
UHGV-2032386_18	eggNOG-mapper	394503.Ccel_3056	VRR-NUC domain-containing protein	NA
UHGV-2032386_18	Structural annotation	PF08774, MF_01490, NF040854, COG1591	NA	NA
UHGV-2032386_19	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2032386_19	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2032386_19	UniRef90	UniRef90_A0A367GJS6	DEAD/DEAH box helicase	NA
UHGV-2032386_19	eggNOG-mapper	1203606.HMPREF1526_00244	snf2 family	NA
UHGV-2032386_19	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2032386_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2032386_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2032386_19	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2032386_21	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-2032386_22	PHROG	phrog_8680	NA	unknown function
UHGV-2032386_22	UniRef90	UniRef90_A0A6L5T7C3	NA	NA
UHGV-2032386_22	eggNOG-mapper	1229517.AMFD01000023_gene1324	NA	NA
UHGV-2032386_22	Pfam	PF14386	NA	DUF4417
UHGV-2032386_22	Structural annotation	PF14386, NF041059	NA	NA
UHGV-2032386_23	KOfam	K23518	MACROD, ymdB; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]	NA
UHGV-2032386_23	UniRef90	UniRef90_A0A367GJM1	RNase III inhibitor	NA
UHGV-2032386_23	eggNOG-mapper	383372.Rcas_0425	PFAM Appr-1-p processing domain protein	NA
UHGV-2032386_23	Pfam	PF01661	Macro domain	Macro
UHGV-2032386_23	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-2032386_23	Structural annotation	PF01661, MF_01205, NF001663, COG2110	NA	NA
UHGV-2032386_27	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2032386_27	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2032386_27	UniRef90	UniRef90_A0A367GIB5	Methyltransferase	NA
UHGV-2032386_27	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-2032386_27	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2032386_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2032386_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2032386_27	COG	COG0863	DNA modification methylase	NA
UHGV-2032386_27	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2032386_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2032386_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2032386_28	UniRef90	UniRef90_A0A367GIK4	PBSX family phage terminase large subunit	NA
UHGV-2032386_28	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-2032386_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2032386_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2032386_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2032386_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2032386_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-2032386_29	UniRef90	UniRef90_A0A3E2XD02	Phage portal protein	NA
UHGV-2032386_29	eggNOG-mapper	1449050.JNLE01000003_gene3894	NA	NA
UHGV-2032386_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2032386_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2032386_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2032386_30	UniRef90	UniRef90_UPI0019688325	phage capsid protein	NA
UHGV-2032386_30	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-2032386_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2032386_30	COG	COG2369	NA	NA
UHGV-2032386_30	Structural annotation	PF06152	NA	NA
UHGV-2032386_31	KOfam	K05521	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	NA
UHGV-2032386_31	PHROG	phrog_6572	ADP-ribosylglycohydrolase	other
UHGV-2032386_31	UniRef90	UniRef90_A0A367GJZ8	ADP-ribosyl-[dinitrogen reductase] hydrolase	NA
UHGV-2032386_31	eggNOG-mapper	1007103.AFHW01000094_gene3200	ADP-ribosylglycohydrolase	NA
UHGV-2032386_31	Pfam	PF03747	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
UHGV-2032386_31	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-2032386_31	Structural annotation	PF03747, NF041672, COG1397	NA	NA
UHGV-2032386_32	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-2032386_32	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2032386_32	UniRef90	UniRef90_A0A367GJL1	Gamma-glutamylcyclotransferase	NA
UHGV-2032386_32	eggNOG-mapper	397288.C806_00791	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-2032386_32	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-2032386_32	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2032386_32	Structural annotation	PF06094, COG2105	NA	NA
UHGV-2032386_33	PHROG	phrog_3939	NA	unknown function
UHGV-2032386_33	eggNOG-mapper	445972.ANACOL_00207	NA	NA
UHGV-2032386_37	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2032386_37	UniRef90	UniRef90_R6RDL0	Putative amidoligase enzyme	NA
UHGV-2032386_37	eggNOG-mapper	457415.HMPREF1006_00457	NA	NA
UHGV-2032386_37	AcrCatalog	cluster_58247	NA	NA
UHGV-2032386_37	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-2032386_37	Structural annotation	PF12224, MF_01609, NF010045, COG2170	NA	NA
UHGV-2032386_38	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-2032386_38	Structural annotation	PF10723	NA	NA
UHGV-2032386_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2032386_39	UniRef90	UniRef90_UPI001C3A5E35	Phage scaffolding protein	NA
UHGV-2032386_39	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2032386_40	PHROG	phrog_247	major head protein	head and packaging
UHGV-2032386_40	UniRef90	UniRef90_A0A3N0ATH1	Coat protein	NA
UHGV-2032386_40	eggNOG-mapper	768710.DesyoDRAFT_1109	NA	NA
UHGV-2032386_40	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-2032386_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2032386_42	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2032386_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2032386_43	UniRef90	UniRef90_UPI001958E7C1	minor capsid protein	NA
UHGV-2032386_43	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-2032386_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2032386_43	Structural annotation	PF11114	NA	NA
UHGV-2032386_44	PHROG	phrog_3266	tail completion	connector
UHGV-2032386_44	eggNOG-mapper	663278.Ethha_0492	NA	NA
UHGV-2032386_44	Structural annotation	PF12691	NA	NA
UHGV-2032386_45	PHROG	phrog_3099	NA	unknown function
UHGV-2032386_45	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-2032386_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2032386_46	PHROG	phrog_11299	NA	unknown function
UHGV-2032386_46	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-2032386_46	Structural annotation	PF10666	NA	NA
UHGV-2032386_47	PHROG	phrog_706	NA	unknown function
UHGV-2032386_47	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-2032386_47	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-2032386_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2032386_47	Structural annotation	PF06854	NA	NA
UHGV-2032386_48	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2032386_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2032386_48	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2032386_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2032386_49	PHROG	phrog_1194	NA	unknown function
UHGV-2032386_49	eggNOG-mapper	411471.SUBVAR_06933	NA	NA
UHGV-2032386_49	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-2032386_50	PHROG	phrog_6616	tail protein	tail
UHGV-2032386_50	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-2032386_50	Structural annotation	PF14594, NF033848, COG4379	NA	NA