UHGV-2032958

Genome information

Genome length 32,721 bps

CDS count 46

Completeness 99.34% (high-quality)

geNomad score 0.9447

Prediction confidence Confident

Genome information
Genome ID	UHGV-2032958
vOTU ID	vOTU-014386
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029113\|Ga0168853_100019\|provirus_152223_184943
BioSample	SAMEA2737867
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.34% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9447
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.31
Jumbo phage	No

Genome content
Genome length	32,721 bps
GC content	54.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	96.27%
Average CDS length	688.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2032958_8	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2032958_8	UniRef90	UniRef90_A0A410S908	ATP-binding protein	NA
UHGV-2032958_8	eggNOG-mapper	1410624.JNKK01000055_gene2198	AAA domain	NA
UHGV-2032958_8	Pfam	PF13479	AAA domain	AAA_24
UHGV-2032958_8	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2032958_9	UniRef90	UniRef90_A0A410S925	NA	NA
UHGV-2032958_9	eggNOG-mapper	1403819.BATR01000122_gene4275	NA	NA
UHGV-2032958_9	Pfam	PF10926	NA	DUF2800
UHGV-2032958_11	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-2032958_11	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2032958_11	UniRef90	UniRef90_A0A410S940	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-2032958_11	eggNOG-mapper	1996.JOFO01000086_gene367	NA	NA
UHGV-2032958_11	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-2032958_11	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-2032958_13	Structural annotation	MF_01326_A, NF007260, NF005100	NA	NA
UHGV-2032958_17	PHROG	phrog_954	DNA methyltransferase	other
UHGV-2032958_17	UniRef90	UniRef90_A0A410S9A2	Class I SAM-dependent methyltransferase	NA
UHGV-2032958_17	eggNOG-mapper	1395513.P343_12775	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2032958_17	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-2032958_17	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-2032958_17	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-2032958_17	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-2032958_17	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-2032958_18	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2032958_18	UniRef90	UniRef90_UPI0015841E4F	conserved phage C-terminal domain-containing protein	NA
UHGV-2032958_18	eggNOG-mapper	402626.Rpic_2326	ROK family	NA
UHGV-2032958_18	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-2032958_18	Structural annotation	PF10771, NF041413, COG0735	NA	NA
UHGV-2032958_19	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2032958_19	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2032958_19	UniRef90	UniRef90_A0A410S8Z8	DNA helicase	NA
UHGV-2032958_19	eggNOG-mapper	349741.Amuc_1377	DnaB-like helicase C terminal domain	NA
UHGV-2032958_19	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2032958_19	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2032958_19	COG	COG0305	Replicative DNA helicase	NA
UHGV-2032958_19	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2032958_21	UniRef90	UniRef90_A0A4Q5IVQ1	ADPrib_exo_Tox domain-containing protein	NA
UHGV-2032958_23	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-2032958_23	UniRef90	UniRef90_A0A410S904	Ubiquitin carboxyl-hydrolase	NA
UHGV-2032958_23	eggNOG-mapper	1072685.IX83_07125	NA	NA
UHGV-2032958_23	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-2032958_23	Structural annotation	PF20901	NA	NA
UHGV-2032958_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2032958_24	UniRef90	UniRef90_A0A1C7PDG0	p-loop containing nucleoside triphosphate hydrolase	NA
UHGV-2032958_24	eggNOG-mapper	580331.Thit_1395	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-2032958_24	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2032958_24	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-2032958_25	Structural annotation	PF05587, PF03388, COG3506	NA	NA
UHGV-2032958_27	UniRef90	UniRef90_UPI001EDF593B	NA	NA
UHGV-2032958_30	PHROG	phrog_315	endolysin	lysis
UHGV-2032958_30	UniRef90	UniRef90_A0A410SED1	PG_binding_3 domain-containing protein	NA
UHGV-2032958_30	eggNOG-mapper	349741.Amuc_1360	Glycosyl hydrolase 108	NA
UHGV-2032958_30	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-2032958_30	COG	COG3926	Lysozyme family protein	NA
UHGV-2032958_30	Structural annotation	PF09374, NF040573, COG3926	NA	NA
UHGV-2032958_31	PHROG	phrog_113	portal protein	head and packaging
UHGV-2032958_31	UniRef90	UniRef90_A0A410S906	NA	NA
UHGV-2032958_31	eggNOG-mapper	794903.OPIT5_08305	NA	NA
UHGV-2032958_31	Pfam	PF06074	NA	DUF935
UHGV-2032958_31	COG	COG4383	NA	NA
UHGV-2032958_34	PHROG	phrog_328	head maturation protease	head and packaging
UHGV-2032958_34	eggNOG-mapper	794903.OPIT5_08310	P22 coat protein - gene protein 5	NA
UHGV-2032958_34	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-2032958_35	UniRef90	UniRef90_A0A6J5N5S1	Major capsid protein	NA
UHGV-2032958_35	eggNOG-mapper	521674.Plim_2126	NA	NA
UHGV-2032958_35	Structural annotation	PF20911, MF_04133, NF041162, COG4397	NA	NA
UHGV-2032958_36	Structural annotation	PF21190, TIGR03511, COG4935	NA	NA
UHGV-2032958_42	Structural annotation	PF14594, TIGR01646, COG4379	NA	NA
UHGV-2032958_43	Structural annotation	PF18404, MF_01520, TIGR03469, COG1442	NA	NA
UHGV-2032958_44	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2032958_44	UniRef90	UniRef90_A0A7Y0YIW4	DNA-binding protein	NA
UHGV-2032958_44	eggNOG-mapper	585199.HMPREF0577_1430	Abi-like protein	NA
UHGV-2032958_44	PADLOC	AbiD	AbiD	Abi
UHGV-2032958_44	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2032958_44	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2032958_44	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2032958_45	Structural annotation	PF18654, TIGR00606, COG0268	NA	NA