UHGV-2032976

Genome information

Genome length 34,857 bps

CDS count 48

Completeness 98.42% (high-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-2032976
vOTU ID	vOTU-010368
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029218\|Ga0168718_100242\|provirus_23768_60677
BioSample	SAMEA2737699
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.36
Jumbo phage	No

Genome content
Genome length	34,857 bps
GC content	35.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.81%
Average CDS length	670.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2032976_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2032976_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2032976_1	UniRef90	UniRef90_A0A413S025	Recombinase family protein	NA
UHGV-2032976_1	eggNOG-mapper	697281.Mahau_2563	resolvase	NA
UHGV-2032976_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2032976_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2032976_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2032976_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2032976_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2032976_2	PHROG	phrog_27136	NA	unknown function
UHGV-2032976_2	UniRef90	UniRef90_UPI001CED3949	zinc ribbon domain-containing protein	NA
UHGV-2032976_2	eggNOG-mapper	1411095.X5JB37_9CAUD	Short C-terminal domain	NA
UHGV-2032976_3	PHROG	phrog_87	metallo-protease	other
UHGV-2032976_3	UniRef90	UniRef90_UPI001D0DE977	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2032976_3	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-2032976_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2032976_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2032976_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2032976_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2032976_4	UniRef90	UniRef90_A0A8G1WXC0	XRE family transcriptional regulator	NA
UHGV-2032976_4	eggNOG-mapper	1235790.C805_00592	Helix-turn-helix XRE-family like proteins	NA
UHGV-2032976_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2032976_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2032976_4	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-2032976_6	UniRef90	UniRef90_UPI00164C9F56	helix-turn-helix domain-containing protein	NA
UHGV-2032976_6	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-2032976_6	Pfam	PF01466	Skp1 family, dimerisation domain	Skp1
UHGV-2032976_6	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2032976_8	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-2032976_8	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-2032976_8	UniRef90	UniRef90_A0A1C6GFL6	Exodeoxyribonuclease 8	NA
UHGV-2032976_8	eggNOG-mapper	1454004.AW11_02382	NA	NA
UHGV-2032976_8	Pfam	PF12684	NA	DUF3799
UHGV-2032976_8	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2032976_8	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-2032976_9	PHROG	phrog_1499	NA	unknown function
UHGV-2032976_9	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-2032976_9	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-2032976_9	Pfam	PF13476	AAA domain	AAA_23
UHGV-2032976_9	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-2032976_9	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-2032976_10	PHROG	phrog_3657	NA	unknown function
UHGV-2032976_10	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-2032976_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2032976_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2032976_11	UniRef90	UniRef90_A0A255IMH7	Single-stranded DNA-binding protein	NA
UHGV-2032976_11	eggNOG-mapper	411463.EUBVEN_00539	Single-stranded DNA-binding protein	NA
UHGV-2032976_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2032976_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2032976_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2032976_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2032976_11	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2032976_12	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2032976_12	UniRef90	UniRef90_A0A2K3JBB6	ERCC4 domain-containing protein	NA
UHGV-2032976_12	eggNOG-mapper	1120998.AUFC01000030_gene2218	NA	NA
UHGV-2032976_12	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2032976_12	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-2032976_13	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2032976_13	PHROG	phrog_11992	NA	unknown function
UHGV-2032976_13	UniRef90	UniRef90_UPI001D07B9F3	CHC2 zinc finger domain-containing protein	NA
UHGV-2032976_13	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-2032976_13	PADLOC	drt-UG29	DRT	DRT
UHGV-2032976_13	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2032976_13	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2032976_13	Structural annotation	PF01807, PF00401	NA	NA
UHGV-2032976_14	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2032976_14	UniRef90	UniRef90_A0A1H9YKF3	NA	NA
UHGV-2032976_14	eggNOG-mapper	357809.Cphy_2984	NA	NA
UHGV-2032976_14	Pfam	PF06048	NA	DUF927
UHGV-2032976_14	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2032976_14	COG	COG5519	NA	NA
UHGV-2032976_14	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-2032976_17	PHROG	phrog_17690	NA	unknown function
UHGV-2032976_17	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-2032976_19	eggNOG-mapper	665950.HMPREF1025_01377	NA	NA
UHGV-2032976_20	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-2032976_20	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-2032976_22	PHROG	phrog_954	DNA methyltransferase	other
UHGV-2032976_22	UniRef90	UniRef90_A0A413RZZ9	Class I SAM-dependent methyltransferase	NA
UHGV-2032976_22	eggNOG-mapper	1395513.P343_12775	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2032976_22	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-2032976_22	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-2032976_22	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-2032976_22	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-2032976_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2032976_23	UniRef90	UniRef90_A0A7C6D6F2	Sigma70_r4 domain-containing protein	NA
UHGV-2032976_23	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-2032976_23	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-2032976_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2032976_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2032976_24	UniRef90	UniRef90_A0A413RCV1	Terminase small subunit	NA
UHGV-2032976_24	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-2032976_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2032976_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2032976_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2032976_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2032976_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2032976_25	UniRef90	UniRef90_A0A413RCQ1	Terminase	NA
UHGV-2032976_25	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-2032976_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2032976_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2032976_25	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2032976_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-2032976_26	UniRef90	UniRef90_A0A413RCQ7	Phage portal protein	NA
UHGV-2032976_26	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-2032976_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2032976_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2032976_27	PHROG	phrog_25639	NA	unknown function
UHGV-2032976_27	eggNOG-mapper	483218.BACPEC_01160	NA	NA
UHGV-2032976_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2032976_28	UniRef90	UniRef90_A0A414EGE0	Minor capsid protein	NA
UHGV-2032976_28	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-2032976_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2032976_28	COG	COG2369	NA	NA
UHGV-2032976_28	Structural annotation	PF06152	NA	NA
UHGV-2032976_31	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2032976_31	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-2032976_32	PHROG	phrog_422	major head protein	head and packaging
UHGV-2032976_32	UniRef90	UniRef90_A0A413RCT9	Capsid protein	NA
UHGV-2032976_32	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-2032976_32	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2032976_33	PHROG	phrog_1378	NA	unknown function
UHGV-2032976_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2032976_34	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-2032976_35	PHROG	phrog_8710	NA	unknown function
UHGV-2032976_35	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-2032976_35	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2032976_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2032976_36	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-2032976_37	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2032976_37	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-2032976_37	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-2032976_37	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2032976_37	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2032976_38	PHROG	phrog_820	major tail protein	tail
UHGV-2032976_38	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-2032976_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2032976_39	PHROG	phrog_8300	NA	unknown function
UHGV-2032976_39	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-2032976_39	Structural annotation	PF06854	NA	NA
UHGV-2032976_40	PHROG	phrog_8355	NA	unknown function
UHGV-2032976_40	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-2032976_40	eggNOG-mapper	483218.BACPEC_01147	Bacteriophage Gp15 protein	NA
UHGV-2032976_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2032976_41	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-2032976_41	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2032976_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2032976_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2032976_42	PHROG	phrog_1194	NA	unknown function
UHGV-2032976_42	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-2032976_42	Pfam	PF20458	NA	DUF6711
UHGV-2032976_42	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2032976_44	PHROG	phrog_17180	NA	unknown function
UHGV-2032976_44	eggNOG-mapper	457424.BFAG_02437	NA	NA
UHGV-2032976_45	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2032976_46	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2032976_46	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-2032976_46	COG	COG4964	Flp pilus assembly protein, secretin CpaC	NA
UHGV-2032976_48	PHROG	phrog_199	holin	lysis
UHGV-2032976_48	UniRef90	UniRef90_A0A373VSF9	Holin	NA
UHGV-2032976_48	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-2032976_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2032976_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2032976_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2032976_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA