UHGV-2032979

Genome information

Genome length 34,715 bps

CDS count 47

Completeness 96.00% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-2032979
vOTU ID	vOTU-009921
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029218\|Ga0168718_100187\|provirus_20338_55052
BioSample	SAMEA2737699
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.00% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.63
Jumbo phage	No

Genome content
Genome length	34,715 bps
GC content	61.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.42%
Average CDS length	677.87 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2032979_2	KOfam	K01740	metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]	NA
UHGV-2032979_2	UniRef90	UniRef90_A0A174DJH1	Methionine gamma-lyase	NA
UHGV-2032979_2	eggNOG-mapper	748224.HMPREF9436_01649	O-acetylhomoserine	NA
UHGV-2032979_2	Pfam	PF01053	Cys/Met metabolism PLP-dependent enzyme	Cys_Met_Meta_PP
UHGV-2032979_2	NCBIFam	TIGR01326.1	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA
UHGV-2032979_2	COG	COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	NA
UHGV-2032979_2	Structural annotation	PF01053, MF_02056, NF006096, COG0626	NA	NA
UHGV-2032979_3	KOfam	K14059	int; integrase	NA
UHGV-2032979_3	PHROG	phrog_1	integrase	integration and excision
UHGV-2032979_3	UniRef90	UniRef90_A0A2A7AII9	Tyr recombinase domain-containing protein	NA
UHGV-2032979_3	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-2032979_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2032979_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2032979_3	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-2032979_4	eggNOG-mapper	748224.HMPREF9436_01443	vancomycin resistance protein	NA
UHGV-2032979_4	COG	COG2720	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	NA
UHGV-2032979_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2032979_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2032979_6	UniRef90	UniRef90_A0A564SVW9	HTH-type transcriptional regulator ImmR	NA
UHGV-2032979_6	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-2032979_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2032979_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2032979_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2032979_8	Structural annotation	PF13601, MF_01819, TIGR03433, COG1695	NA	NA
UHGV-2032979_10	UniRef90	UniRef90_A0A2A7BGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-2032979_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2032979_10	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-2032979_13	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-2032979_15	UniRef90	UniRef90_UPI001D0E65C2	NA	NA
UHGV-2032979_15	Pfam	PF12957	NA	DUF3846
UHGV-2032979_15	Structural annotation	PF12957	NA	NA
UHGV-2032979_16	UniRef90	UniRef90_UPI00196846D9	cell envelope integrity protein TolA	NA
UHGV-2032979_16	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-2032979_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2032979_17	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2032979_17	PHROG	phrog_1499	NA	unknown function
UHGV-2032979_17	UniRef90	UniRef90_A0A2A7AIJ9	Chromosome segregation protein SMC	NA
UHGV-2032979_17	eggNOG-mapper	641112.ACOK01000073_gene2873	domain protein	NA
UHGV-2032979_17	Pfam	PF13476	AAA domain	AAA_23
UHGV-2032979_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2032979_17	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-2032979_18	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2032979_18	UniRef90	UniRef90_UPI00122C2B12	ATP-binding protein	NA
UHGV-2032979_18	eggNOG-mapper	1273103.NM10_06861	AAA domain	NA
UHGV-2032979_18	Pfam	PF13479	AAA domain	AAA_24
UHGV-2032979_18	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2032979_19	PHROG	phrog_2698	NA	unknown function
UHGV-2032979_19	UniRef90	UniRef90_A0A291T9B6	NA	NA
UHGV-2032979_19	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-2032979_19	Structural annotation	PF05037	NA	NA
UHGV-2032979_20	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2032979_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2032979_20	UniRef90	UniRef90_A0A3A6K1C0	DEAD/DEAH box helicase	NA
UHGV-2032979_20	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-2032979_20	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2032979_20	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2032979_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2032979_20	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2032979_20	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2032979_21	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2032979_21	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2032979_21	UniRef90	UniRef90_A0A2A6Z731	DNA primase	NA
UHGV-2032979_21	eggNOG-mapper	742738.HMPREF9460_01357	Primase C terminal 2 (PriCT-2)	NA
UHGV-2032979_21	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2032979_21	Pfam	PF13481	AAA domain	AAA_25
UHGV-2032979_21	COG	COG3598	RecA-family ATPase	NA
UHGV-2032979_21	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2032979_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2032979_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2032979_22	UniRef90	UniRef90_UPI00122CFAB3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2032979_22	eggNOG-mapper	394503.Ccel_3302	endodeoxyribonuclease RusA	NA
UHGV-2032979_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2032979_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2032979_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2032979_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2032979_23	UniRef90	UniRef90_A0A3A6JSY6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2032979_23	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-2032979_23	Structural annotation	PF04545, MF_00674, NF005248, COG1595	NA	NA
UHGV-2032979_24	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2032979_24	UniRef90	UniRef90_A0A564SBG0	HNH endonuclease	NA
UHGV-2032979_24	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-2032979_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2032979_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2032979_24	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2032979_25	PHROG	phrog_104	portal protein	head and packaging
UHGV-2032979_25	UniRef90	UniRef90_A0A564SBV0	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2032979_25	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2032979_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2032979_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2032979_26	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-2032979_26	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-2032979_26	UniRef90	UniRef90_UPI001F3BD4CE	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2032979_26	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-2032979_26	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2032979_26	COG	COG2369	NA	NA
UHGV-2032979_26	Structural annotation	PF03496	NA	NA
UHGV-2032979_28	PHROG	phrog_17688	NA	unknown function
UHGV-2032979_28	UniRef90	UniRef90_A0A564SCG0	Phage Terminase	NA
UHGV-2032979_28	eggNOG-mapper	936375.HMPREF1152_0677	phage terminase, large subunit	NA
UHGV-2032979_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2032979_28	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2032979_29	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-2032979_29	UniRef90	UniRef90_A0A2S0L5H5	Phage scaffold protein	NA
UHGV-2032979_29	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-2032979_29	Structural annotation	PF14265	NA	NA
UHGV-2032979_30	PHROG	phrog_32396	NA	unknown function
UHGV-2032979_30	UniRef90	UniRef90_A0A564SB39	Phage capsid family protein	NA
UHGV-2032979_30	eggNOG-mapper	1321784.HMPREF1987_01073	Phage capsid family	NA
UHGV-2032979_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2032979_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2032979_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2032979_32	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2032979_32	UniRef90	UniRef90_A0A564SC88	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2032979_32	eggNOG-mapper	768726.HMPREF9178_1061	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2032979_32	Pfam	PF09355	NA	Phage_Gp19
UHGV-2032979_32	Structural annotation	PF09355	NA	NA
UHGV-2032979_33	PHROG	phrog_501	head closure Hc1	connector
UHGV-2032979_33	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-2032979_33	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-2032979_33	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2032979_34	PHROG	phrog_387	neck protein	connector
UHGV-2032979_34	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-2032979_34	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-2032979_35	PHROG	phrog_123	tail terminator	connector
UHGV-2032979_35	UniRef90	UniRef90_R6D1D5	NA	NA
UHGV-2032979_35	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-2032979_35	Structural annotation	PF06141	NA	NA
UHGV-2032979_36	PHROG	phrog_117	major tail protein	tail
UHGV-2032979_36	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-2032979_36	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-2032979_36	COG	COG5492	NA	NA
UHGV-2032979_36	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2032979_37	PHROG	phrog_1526	NA	unknown function
UHGV-2032979_37	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-2032979_38	Structural annotation	PF17318	NA	NA
UHGV-2032979_39	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2032979_39	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-2032979_39	COG	COG1511	NA	NA
UHGV-2032979_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2032979_40	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-2032979_40	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-2032979_40	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2032979_41	PHROG	phrog_538	minor tail protein	tail
UHGV-2032979_41	UniRef90	UniRef90_UPI001C0C4E4F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2032979_41	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-2032979_41	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2032979_41	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2032979_42	PHROG	phrog_9534	head protein	head and packaging
UHGV-2032979_42	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-2032979_42	Structural annotation	PF21567	NA	NA
UHGV-2032979_43	PHROG	phrog_2310	NA	unknown function
UHGV-2032979_44	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2032979_44	PHROG	phrog_894	endolysin	lysis
UHGV-2032979_44	UniRef90	UniRef90_A0A1C5NY12	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-2032979_44	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-2032979_44	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2032979_44	COG	COG3108	NA	NA
UHGV-2032979_44	Structural annotation	PF05951, COG3108	NA	NA
UHGV-2032979_45	PHROG	phrog_1863	NA	unknown function
UHGV-2032979_45	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-2032979_46	PHROG	phrog_263	holin	lysis
UHGV-2032979_46	UniRef90	UniRef90_A0A3E2UFE4	Phage holin	NA
UHGV-2032979_46	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-2032979_46	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2032979_46	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2032979_46	Structural annotation	PF04688	NA	NA
UHGV-2032979_47	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-2032979_47	PHROG	phrog_24603	NA	unknown function
UHGV-2032979_47	UniRef90	UniRef90_A0A291T8I8	Spo0A_C domain-containing protein	NA
UHGV-2032979_47	eggNOG-mapper	1226322.HMPREF1545_01110	Sporulation initiation factor Spo0A C terminal	NA
UHGV-2032979_47	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-2032979_47	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-2032979_47	Structural annotation	PF08769, TIGR02875	NA	NA