UHGV-2032993

Genome information

vOTU vOTU-019851

Genome length 27,896 bps

CDS count 44

Completeness 66.22% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-2032993
vOTU ID	vOTU-019851
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029120\|Ga0168814_100675
BioSample	SAMEA2737795
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.53
Jumbo phage	No

Genome content
Genome length	27,896 bps
GC content	51.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	89.19%
Average CDS length	567.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2032993_1	PHROG	phrog_4433	NA	unknown function
UHGV-2032993_1	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-2032993_1	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-2032993_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2032993_2	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2032993_2	UniRef90	UniRef90_UPI001CBC74BC	Rha family transcriptional regulator	NA
UHGV-2032993_2	eggNOG-mapper	748224.HMPREF9436_01449	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2032993_2	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2032993_2	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2032993_2	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2032993_2	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-2032993_5	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-2032993_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2032993_5	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2032993_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2032993_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2032993_6	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-2032993_6	eggNOG-mapper	1051631.F8HGQ0_9CAUD	DNA binding	NA
UHGV-2032993_6	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2032993_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2032993_6	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-2032993_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2032993_7	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-2032993_7	eggNOG-mapper	699218.HMPREF0889_0208	Helix-turn-helix XRE-family like proteins	NA
UHGV-2032993_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2032993_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2032993_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2032993_8	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-2032993_11	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-2032993_11	UniRef90	UniRef90_UPI000F643789	Ltp family lipoprotein	NA
UHGV-2032993_11	eggNOG-mapper	428127.EUBDOL_01530	Host cell surface-exposed lipoprotein	NA
UHGV-2032993_11	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2032993_11	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-2032993_11	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2032993_11	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-2032993_14	UniRef90	UniRef90_UPI0018CC79B4	helix-turn-helix domain-containing protein	NA
UHGV-2032993_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2032993_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2032993_14	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-2032993_15	KOfam	K14059	int; integrase	NA
UHGV-2032993_15	PHROG	phrog_1	integrase	integration and excision
UHGV-2032993_15	UniRef90	UniRef90_E2ZNV1	Site-specific recombinase, phage integrase family	NA
UHGV-2032993_15	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-2032993_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2032993_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2032993_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2032993_15	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-2032993_17	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-2032993_17	Structural annotation	PF12510	NA	NA
UHGV-2032993_18	PHROG	phrog_20016	NA	unknown function
UHGV-2032993_18	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2032993_18	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-2032993_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2032993_19	PHROG	phrog_16490	NA	unknown function
UHGV-2032993_19	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-2032993_21	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2032993_21	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-2032993_21	eggNOG-mapper	397290.C810_05173	NA	NA
UHGV-2032993_22	PHROG	phrog_21718	NA	unknown function
UHGV-2032993_22	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-2032993_23	PHROG	phrog_3754	NA	unknown function
UHGV-2032993_23	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-2032993_24	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-2032993_25	PHROG	phrog_15303	NA	unknown function
UHGV-2032993_27	KOfam	K07273	acm; lysozyme	NA
UHGV-2032993_27	PHROG	phrog_291	endolysin	lysis
UHGV-2032993_27	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-2032993_27	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-2032993_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2032993_27	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2032993_27	Structural annotation	PF01183, COG3757	NA	NA
UHGV-2032993_28	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-2032993_28	PHROG	phrog_5240	tail fiber protein	tail
UHGV-2032993_28	eggNOG-mapper	1410650.JHWL01000010_gene2723	NA	NA
UHGV-2032993_28	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2032993_28	Structural annotation	PF13472, NF007819, COG2755	NA	NA
UHGV-2032993_29	eggNOG-mapper	1304866.K413DRAFT_1235	PFAM Phage tail protein	NA
UHGV-2032993_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-2032993_29	Structural annotation	PF11681, TIGR01633, COG4722	NA	NA
UHGV-2032993_31	PHROG	phrog_3558	tail protein	tail
UHGV-2032993_31	UniRef90	UniRef90_A0A844DGT5	Prophage_tail domain-containing protein	NA
UHGV-2032993_31	eggNOG-mapper	658088.HMPREF0987_01107	Prophage endopeptidase tail	NA
UHGV-2032993_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2032993_31	COG	COG4926	Phage-related protein	NA
UHGV-2032993_31	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2032993_32	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2032993_32	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-2032993_32	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-2032993_32	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2032993_32	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2032993_32	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2032993_32	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2032993_35	PHROG	phrog_885	major tail protein	tail
UHGV-2032993_35	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-2032993_35	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-2032993_35	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2032993_36	Structural annotation	PF13554	NA	NA
UHGV-2032993_37	PHROG	phrog_17977	NA	unknown function
UHGV-2032993_37	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-2032993_37	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2032993_39	PHROG	phrog_544	major head protein	head and packaging
UHGV-2032993_39	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-2032993_39	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-2032993_39	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2032993_40	Structural annotation	PF06810	NA	NA
UHGV-2032993_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2032993_42	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-2032993_42	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2032993_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2032993_42	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2032993_44	PHROG	phrog_8680	NA	unknown function
UHGV-2032993_44	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-2032993_44	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2032993_44	Pfam	PF14386	NA	DUF4417
UHGV-2032993_44	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2032993_44	Structural annotation	PF14386	NA	NA