UHGV-2034447

Genome information

Genome length 32,769 bps

CDS count 48

Completeness 99.90% (high-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-2034447
vOTU ID	vOTU-008532
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029331\|Ga0243780_100135\|provirus_24477_57245
BioSample	SAMN05971486
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.98
Jumbo phage	No

Genome content
Genome length	32,769 bps
GC content	58.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.00%
Average CDS length	632.06 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2034447_1	KOfam	K07273	acm; lysozyme	NA
UHGV-2034447_1	PHROG	phrog_291	endolysin	lysis
UHGV-2034447_1	UniRef90	UniRef90_A0A1Y4GDT9	LysM domain-containing protein	NA
UHGV-2034447_1	eggNOG-mapper	445975.COLSTE_02142	CW_7 repeat	NA
UHGV-2034447_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2034447_1	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2034447_1	Pfam	PF01476	LysM domain	LysM
UHGV-2034447_1	COG	COG1388	LysM repeat	NA
UHGV-2034447_1	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2034447_2	UniRef90	UniRef90_A0A1Y4G4Q3	Peptidase_C39_2 domain-containing protein	NA
UHGV-2034447_2	eggNOG-mapper	1280698.AUJS01000108_gene579	Papain-like cysteine protease AvrRpt2	NA
UHGV-2034447_2	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-2034447_2	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-2034447_2	Structural annotation	PF03412, NF033920, COG3271	NA	NA
UHGV-2034447_3	PHROG	phrog_10091	holin	lysis
UHGV-2034447_3	UniRef90	UniRef90_A0A1Y4G372	Phage holin	NA
UHGV-2034447_3	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-2034447_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2034447_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2034447_3	COG	COG5546	NA	NA
UHGV-2034447_3	Structural annotation	COG5546	NA	NA
UHGV-2034447_4	eggNOG-mapper	1437605.BACT_0481	NA	NA
UHGV-2034447_5	PHROG	phrog_18593	NA	unknown function
UHGV-2034447_5	UniRef90	UniRef90_B6GDG6	Carbohydrate binding domain protein	NA
UHGV-2034447_5	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-2034447_5	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2034447_5	Structural annotation	PF14600	NA	NA
UHGV-2034447_6	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2034447_6	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2034447_6	UniRef90	UniRef90_A0A1Y4G3H0	Reverse transcriptase domain-containing protein	NA
UHGV-2034447_6	eggNOG-mapper	445975.COLSTE_02147	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2034447_6	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2034447_6	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2034447_6	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2034447_6	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-2034447_7	UniRef90	UniRef90_B6GDG8	NA	NA
UHGV-2034447_8	eggNOG-mapper	445975.COLSTE_02149	NA	NA
UHGV-2034447_8	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-2034447_9	UniRef90	UniRef90_UPI00189DCC7C	NA	NA
UHGV-2034447_9	eggNOG-mapper	445975.COLSTE_02150	NA	NA
UHGV-2034447_9	Pfam	PF19789	NA	DUF6273
UHGV-2034447_9	Structural annotation	PF19789	NA	NA
UHGV-2034447_10	PHROG	phrog_19280	NA	unknown function
UHGV-2034447_10	UniRef90	UniRef90_UPI00189E73EF	BppU family phage baseplate upper protein	NA
UHGV-2034447_10	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-2034447_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2034447_10	Structural annotation	PF10651, NF040788	NA	NA
UHGV-2034447_11	UniRef90	UniRef90_A0A0H3ECL1	Major factor subunit	NA
UHGV-2034447_11	eggNOG-mapper	445975.COLSTE_02152	NA	NA
UHGV-2034447_12	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-2034447_12	UniRef90	UniRef90_B6GDH3	Phage minor structural protein, N-terminal domain protein	NA
UHGV-2034447_12	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-2034447_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2034447_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2034447_12	COG	COG4926	Phage-related protein	NA
UHGV-2034447_12	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-2034447_13	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2034447_13	UniRef90	UniRef90_B6GDH4	Putative phage tail component domain protein	NA
UHGV-2034447_13	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-2034447_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2034447_13	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2034447_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-2034447_13	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2034447_14	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-2034447_14	PHROG	phrog_23464	NA	unknown function
UHGV-2034447_14	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-2034447_14	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-2034447_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2034447_14	Structural annotation	COG5280	NA	NA
UHGV-2034447_16	Structural annotation	PF12363	NA	NA
UHGV-2034447_17	PHROG	phrog_88	major tail protein	tail
UHGV-2034447_17	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-2034447_17	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-2034447_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2034447_17	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2034447_18	eggNOG-mapper	411473.RUMCAL_01153	NA	NA
UHGV-2034447_18	Structural annotation	PF05657	NA	NA
UHGV-2034447_19	UniRef90	UniRef90_UPI00082989AC	HK97 gp10 family phage protein	NA
UHGV-2034447_19	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-2034447_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2034447_20	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2034447_20	UniRef90	UniRef90_B6GDI0	Putative phage head-tail adaptor	NA
UHGV-2034447_20	eggNOG-mapper	913865.DOT_5630	NA	NA
UHGV-2034447_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2034447_21	PHROG	phrog_5223	neck protein	connector
UHGV-2034447_21	UniRef90	UniRef90_B6GDI1	Putative phage DNA packaging protein	NA
UHGV-2034447_21	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-2034447_21	Structural annotation	TIGR01560	NA	NA
UHGV-2034447_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-2034447_22	UniRef90	UniRef90_A0A1Y4GBR5	Phage major capsid protein	NA
UHGV-2034447_22	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-2034447_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2034447_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2034447_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2034447_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2034447_23	KOfam	K06904	NA	NA
UHGV-2034447_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2034447_23	UniRef90	UniRef90_UPI00189D4AF0	HK97 family phage prohead protease	NA
UHGV-2034447_23	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-2034447_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2034447_23	COG	COG3740	Phage head maturation protease	NA
UHGV-2034447_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2034447_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-2034447_24	UniRef90	UniRef90_A0A4Q2K609	Phage portal protein	NA
UHGV-2034447_24	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-2034447_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2034447_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2034447_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2034447_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2034447_25	UniRef90	UniRef90_B6GDI5	Putative phage terminase, large subunit	NA
UHGV-2034447_25	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-2034447_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2034447_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2034447_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2034447_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2034447_26	PHROG	phrog_1066	NA	unknown function
UHGV-2034447_26	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-2034447_26	Structural annotation	TIGR01558	NA	NA
UHGV-2034447_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2034447_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2034447_27	UniRef90	UniRef90_B6GDI7	HNH endonuclease domain protein	NA
UHGV-2034447_27	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-2034447_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2034447_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2034447_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2034447_28	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-2034447_28	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-2034447_29	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2034447_29	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2034447_29	UniRef90	UniRef90_B6GDI9	dUTP diphosphatase	NA
UHGV-2034447_29	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-2034447_29	Pfam	PF00692	dUTPase	dUTPase
UHGV-2034447_29	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-2034447_29	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2034447_29	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-2034447_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2034447_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2034447_31	UniRef90	UniRef90_R7DAW4	Single-stranded DNA-binding protein	NA
UHGV-2034447_31	eggNOG-mapper	445975.COLSTE_02172	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2034447_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2034447_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2034447_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2034447_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2034447_31	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-2034447_33	PHROG	phrog_21723	NA	unknown function
UHGV-2034447_33	UniRef90	UniRef90_A0A838G2W1	30S ribosomal protein S13	NA
UHGV-2034447_33	eggNOG-mapper	1068978.AMETH_4141	integration host factor	NA
UHGV-2034447_33	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-2034447_33	COG	COG0099	Ribosomal protein S13	NA
UHGV-2034447_33	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-2034447_36	KOfam	K14059	int; integrase	NA
UHGV-2034447_36	PHROG	phrog_1	integrase	integration and excision
UHGV-2034447_36	UniRef90	UniRef90_R7D9N8	Site-specific recombinase phage integrase family	NA
UHGV-2034447_36	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-2034447_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2034447_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2034447_36	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2034447_38	PHROG	phrog_1689	nucleotide kinase	other
UHGV-2034447_38	UniRef90	UniRef90_A0A7K3XYV9	NA	NA
UHGV-2034447_38	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-2034447_38	Pfam	PF11753	NA	DUF3310
UHGV-2034447_40	PHROG	phrog_24189	NA	unknown function
UHGV-2034447_40	UniRef90	UniRef90_R7D7E6	NA	NA
UHGV-2034447_40	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-2034447_40	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2034447_40	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-2034447_43	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-2034447_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2034447_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2034447_45	UniRef90	UniRef90_R7D821	Transcriptional regulator XRE family	NA
UHGV-2034447_45	eggNOG-mapper	525245.HMPREF0044_0294	Helix-turn-helix XRE-family like proteins	NA
UHGV-2034447_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2034447_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2034447_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2034447_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2034447_46	UniRef90	UniRef90_R7D7E3	Putative DNA-binding phage protein	NA
UHGV-2034447_46	eggNOG-mapper	411467.BACCAP_02432	sequence-specific DNA binding	NA
UHGV-2034447_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2034447_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2034447_47	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-2034447_47	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2034447_47	UniRef90	UniRef90_R7D9M3	Exonuclease domain-containing protein	NA
UHGV-2034447_47	eggNOG-mapper	500632.CLONEX_02619	NA	NA
UHGV-2034447_47	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2034447_47	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2034447_47	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-2034447_48	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2034447_48	PHROG	phrog_95	integrase	integration and excision
UHGV-2034447_48	UniRef90	UniRef90_B6GDL0	Resolvase, N-terminal domain protein	NA
UHGV-2034447_48	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-2034447_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2034447_48	Pfam	PF07508	Recombinase	Recombinase
UHGV-2034447_48	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2034447_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2034447_48	Structural annotation	PF00239, NF041201, COG2452	NA	NA