UHGV-2034822

Genome information

Genome length 32,684 bps

CDS count 46

Completeness 92.40% (high-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-2034822
vOTU ID	vOTU-067229
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029335\|Ga0243762_100863\|provirus_3_32686
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.39
Jumbo phage	No

Genome content
Genome length	32,684 bps
GC content	45.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.75%
Average CDS length	665.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2034822_1	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2034822_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2034822_1	UniRef90	UniRef90_A0A350VIS0	Transcriptional regulator	NA
UHGV-2034822_1	eggNOG-mapper	1123263.AUKY01000072_gene2113	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2034822_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2034822_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2034822_1	Structural annotation	PF01381, NF041677, COG1396	NA	NA
UHGV-2034822_2	Structural annotation	PF17648, NF007603, COG2315	NA	NA
UHGV-2034822_6	Structural annotation	PF13058	NA	NA
UHGV-2034822_8	eggNOG-mapper	411468.CLOSCI_00572	NA	NA
UHGV-2034822_10	PHROG	phrog_20014	NA	unknown function
UHGV-2034822_10	eggNOG-mapper	1235798.C817_02590	NA	NA
UHGV-2034822_11	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2034822_11	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2034822_11	UniRef90	UniRef90_UPI00189F9B8A	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2034822_11	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-2034822_11	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-2034822_11	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2034822_11	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2034822_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2034822_11	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2034822_13	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2034822_13	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-2034822_13	UniRef90	UniRef90_UPI00189D9989	DNA cytosine methyltransferase	NA
UHGV-2034822_13	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-2034822_13	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-2034822_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2034822_15	PHROG	phrog_24386	NA	unknown function
UHGV-2034822_15	eggNOG-mapper	411468.CLOSCI_00562	COG NOG28949 non supervised orthologous group	NA
UHGV-2034822_15	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-2034822_15	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-2034822_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2034822_18	eggNOG-mapper	411468.CLOSCI_00558	NA	NA
UHGV-2034822_18	Structural annotation	PF21578	NA	NA
UHGV-2034822_19	PHROG	phrog_824	NA	unknown function
UHGV-2034822_19	UniRef90	UniRef90_A0A374JR68	VRR-NUC domain-containing protein	NA
UHGV-2034822_19	eggNOG-mapper	411468.CLOSCI_00556	VRR_NUC	NA
UHGV-2034822_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2034822_21	eggNOG-mapper	411468.CLOSCI_00554	NA	NA
UHGV-2034822_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2034822_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2034822_22	UniRef90	UniRef90_A0A374JQS6	HNH endonuclease	NA
UHGV-2034822_22	eggNOG-mapper	411468.CLOSCI_00553	HNH endonuclease	NA
UHGV-2034822_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2034822_23	PHROG	phrog_1066	NA	unknown function
UHGV-2034822_23	eggNOG-mapper	411902.CLOBOL_03883	NA	NA
UHGV-2034822_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2034822_24	UniRef90	UniRef90_A0A374JP15	Terminase large subunit	NA
UHGV-2034822_24	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-2034822_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2034822_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2034822_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2034822_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2034822_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-2034822_25	UniRef90	UniRef90_A0A374JP76	Phage portal protein	NA
UHGV-2034822_25	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-2034822_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2034822_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2034822_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2034822_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2034822_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2034822_26	UniRef90	UniRef90_A0A374JQH6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2034822_26	eggNOG-mapper	411468.CLOSCI_00549	COG COG0740 Protease subunit of ATP-dependent Clp proteases	NA
UHGV-2034822_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2034822_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2034822_26	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2034822_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-2034822_27	UniRef90	UniRef90_A0A374JNW0	Phage major capsid protein	NA
UHGV-2034822_27	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-2034822_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2034822_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2034822_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2034822_28	PHROG	phrog_5223	neck protein	connector
UHGV-2034822_28	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-2034822_28	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-2034822_29	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2034822_29	UniRef90	UniRef90_UPI00189EBA11	phage head closure protein	NA
UHGV-2034822_29	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-2034822_29	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2034822_29	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2034822_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2034822_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2034822_30	UniRef90	UniRef90_UPI001C00E12E	HK97 gp10 family phage protein	NA
UHGV-2034822_30	eggNOG-mapper	457421.CBFG_03712	NA	NA
UHGV-2034822_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2034822_31	eggNOG-mapper	411468.CLOSCI_00544	NA	NA
UHGV-2034822_31	Structural annotation	PF20765	NA	NA
UHGV-2034822_32	PHROG	phrog_2175	protein with Ig domain	other
UHGV-2034822_32	eggNOG-mapper	411468.CLOSCI_00543	NA	NA
UHGV-2034822_32	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2034822_33	PHROG	phrog_29863	NA	unknown function
UHGV-2034822_33	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-2034822_33	Structural annotation	PF17388	NA	NA
UHGV-2034822_34	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2034822_34	UniRef90	UniRef90_A0A174XH68	Phage tail tape measure protein, TP901 family	NA
UHGV-2034822_34	eggNOG-mapper	411468.CLOSCI_00540	Phage tail tape measure protein, TP901 family	NA
UHGV-2034822_34	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2034822_34	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2034822_34	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2034822_34	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2034822_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2034822_35	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-2034822_35	eggNOG-mapper	1567011.A0A0A7RWN1_9VIRU	Phage tail protein	NA
UHGV-2034822_35	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2034822_35	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2034822_36	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2034822_36	UniRef90	UniRef90_UPI00189EFADE	phage tail protein	NA
UHGV-2034822_36	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2034822_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2034822_36	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2034822_36	COG	COG4926	Phage-related protein	NA
UHGV-2034822_36	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2034822_39	PHROG	phrog_19280	NA	unknown function
UHGV-2034822_39	eggNOG-mapper	537013.CLOSTMETH_03776	NA	NA
UHGV-2034822_39	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2034822_39	Structural annotation	PF10651, NF010435	NA	NA
UHGV-2034822_40	PHROG	phrog_5302	tail protein	tail
UHGV-2034822_40	eggNOG-mapper	411468.CLOSCI_01504	NA	NA
UHGV-2034822_40	Structural annotation	COG1262	NA	NA
UHGV-2034822_41	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2034822_41	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2034822_41	UniRef90	UniRef90_A0A416UF24	Reverse transcriptase domain-containing protein	NA
UHGV-2034822_41	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2034822_41	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2034822_41	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2034822_41	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2034822_42	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2034822_42	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2034822_43	eggNOG-mapper	742733.HMPREF9469_01798	NA	NA
UHGV-2034822_44	PHROG	phrog_263	holin	lysis
UHGV-2034822_44	UniRef90	UniRef90_R6GD40	Holin SPP1 family	NA
UHGV-2034822_44	eggNOG-mapper	764291.STRUR_2085	SPP1 phage holin	NA
UHGV-2034822_44	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2034822_44	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2034822_44	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-2034822_45	KOfam	K07273	acm; lysozyme	NA
UHGV-2034822_45	PHROG	phrog_291	endolysin	lysis
UHGV-2034822_45	UniRef90	UniRef90_A0A374JNX4	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2034822_45	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-2034822_45	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2034822_45	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2034822_45	Pfam	PF01476	LysM domain	LysM
UHGV-2034822_45	COG	COG1388	LysM repeat	NA
UHGV-2034822_45	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2034822_46	KOfam	K06168	miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]	NA
UHGV-2034822_46	UniRef90	UniRef90_A0A174G4D8	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	NA
UHGV-2034822_46	eggNOG-mapper	140626.JHWB01000016_gene2411	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-2034822_46	Pfam	PF00919	NA	UPF0004
UHGV-2034822_46	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2034822_46	Pfam	PF01938	TRAM domain	TRAM
UHGV-2034822_46	NCBIFam	TIGR01574.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA
UHGV-2034822_46	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-2034822_46	HAMAP	MF_01864	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]	NA
UHGV-2034822_46	Structural annotation	PF00919, PF20903, MF_01864, TIGR01574, COG0621	NA	NA