UHGV-2035333

Genome information

Genome length 37,242 bps

CDS count 52

Completeness 97.20% (high-quality)

geNomad score 0.9720

Prediction confidence Confident

Genome information
Genome ID	UHGV-2035333
vOTU ID	vOTU-014623
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029359\|Ga0243835_1000173\|provirus_19970_57211
BioSample	SAMN05971542
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.20% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9720
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.61
Jumbo phage	No

Genome content
Genome length	37,242 bps
GC content	49.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.35%
Average CDS length	664.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2035333_1	PHROG	phrog_263	holin	lysis
UHGV-2035333_1	UniRef90	UniRef90_R6ITV1	Phage lysis protein holin	NA
UHGV-2035333_1	eggNOG-mapper	445971.ANASTE_00091	SPP1 phage holin	NA
UHGV-2035333_1	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2035333_1	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-2035333_2	PHROG	phrog_1863	NA	unknown function
UHGV-2035333_2	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-2035333_2	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-2035333_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2035333_3	PHROG	phrog_435	endolysin	lysis
UHGV-2035333_3	UniRef90	UniRef90_R6HWJ2	MurNAc-LAA domain-containing protein	NA
UHGV-2035333_3	eggNOG-mapper	1203606.HMPREF1526_00346	Ami_3	NA
UHGV-2035333_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2035333_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2035333_3	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-2035333_4	PHROG	phrog_27545	NA	unknown function
UHGV-2035333_4	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-2035333_4	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-2035333_4	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2035333_6	Structural annotation	PF02973	NA	NA
UHGV-2035333_7	KOfam	K19479	COL10A; collagen type X alpha	NA
UHGV-2035333_7	PHROG	phrog_11541	NA	unknown function
UHGV-2035333_7	eggNOG-mapper	1469948.JPNB01000002_gene4082	GDSL-like Lipase/Acylhydrolase	NA
UHGV-2035333_7	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2035333_7	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2035333_7	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2035333_9	PHROG	phrog_6616	tail protein	tail
UHGV-2035333_9	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-2035333_9	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-2035333_9	COG	COG4926	Phage-related protein	NA
UHGV-2035333_9	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2035333_10	PHROG	phrog_1194	NA	unknown function
UHGV-2035333_10	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-2035333_10	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-2035333_10	Pfam	PF20458	NA	DUF6711
UHGV-2035333_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2035333_11	PHROG	phrog_26910	NA	unknown function
UHGV-2035333_11	eggNOG-mapper	1117958.PE143B_0109845	NA	NA
UHGV-2035333_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2035333_12	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-2035333_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2035333_13	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-2035333_13	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-2035333_13	Structural annotation	PF19591	NA	NA
UHGV-2035333_14	PHROG	phrog_158	major tail protein	tail
UHGV-2035333_14	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-2035333_14	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-2035333_14	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2035333_15	Structural annotation	PF05657	NA	NA
UHGV-2035333_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2035333_16	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-2035333_16	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2035333_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2035333_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2035333_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2035333_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2035333_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2035333_18	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-2035333_18	eggNOG-mapper	268407.PWYN_03015	NA	NA
UHGV-2035333_19	PHROG	phrog_283	major head protein	head and packaging
UHGV-2035333_19	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-2035333_19	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-2035333_19	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2035333_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2035333_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2035333_20	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-2035333_20	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-2035333_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2035333_22	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2035333_22	UniRef90	UniRef90_A0A3D2QEP6	Phage_Mu_F domain-containing protein	NA
UHGV-2035333_22	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-2035333_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2035333_22	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-2035333_22	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2035333_22	COG	COG2369	NA	NA
UHGV-2035333_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-2035333_23	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-2035333_23	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2035333_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2035333_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2035333_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2035333_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2035333_24	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-2035333_24	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-2035333_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2035333_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2035333_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2035333_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2035333_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2035333_25	PHROG	phrog_17390	NA	unknown function
UHGV-2035333_25	UniRef90	UniRef90_UPI001E61FF52	terminase small subunit	NA
UHGV-2035333_25	eggNOG-mapper	1158614.I592_02434	Terminase small subunit	NA
UHGV-2035333_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2035333_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2035333_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2035333_27	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-2035333_27	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2035333_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2035333_27	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2035333_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2035333_28	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2035333_28	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2035333_28	eggNOG-mapper	477974.Daud_0813	NA	NA
UHGV-2035333_28	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2035333_30	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-2035333_31	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2035333_31	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2035333_31	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-2035333_31	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-2035333_31	Pfam	PF00692	dUTPase	dUTPase
UHGV-2035333_31	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-2035333_31	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2035333_31	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-2035333_33	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-2035333_33	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-2035333_33	eggNOG-mapper	1567013.A0A0A7RTL4_9CAUD	calcium ion binding	NA
UHGV-2035333_33	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2035333_33	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2035333_33	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-2035333_34	PHROG	phrog_2113	NA	unknown function
UHGV-2035333_34	UniRef90	UniRef90_A0A832PDJ8	DNA replication protein	NA
UHGV-2035333_34	eggNOG-mapper	871968.DESME_09725	NA	NA
UHGV-2035333_34	Structural annotation	PF21715	NA	NA
UHGV-2035333_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2035333_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2035333_35	UniRef90	UniRef90_R6I6X7	Single-stranded DNA-binding protein	NA
UHGV-2035333_35	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-2035333_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2035333_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2035333_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2035333_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2035333_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2035333_37	PHROG	phrog_7566	NA	unknown function
UHGV-2035333_37	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-2035333_38	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2035333_38	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2035333_38	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2035333_38	Structural annotation	PF05772	NA	NA
UHGV-2035333_39	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2035333_39	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-2035333_39	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-2035333_39	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-2035333_40	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2035333_40	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-2035333_40	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-2035333_40	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2035333_40	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2035333_42	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-2035333_42	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-2035333_42	UniRef90	UniRef90_R6EQX1	Beta sliding clamp	NA
UHGV-2035333_42	eggNOG-mapper	166318.Syn8016DRAFT_2824	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-2035333_42	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-2035333_42	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-2035333_42	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-2035333_42	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-2035333_42	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-2035333_42	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-2035333_43	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2035333_43	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2035333_43	UniRef90	UniRef90_A0A316L965	DNA methylase N-4	NA
UHGV-2035333_43	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-2035333_43	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2035333_43	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2035333_43	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2035333_43	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2035333_43	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-2035333_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2035333_44	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-2035333_44	eggNOG-mapper	696369.KI912183_gene1572	PFAM helix-turn-helix	NA
UHGV-2035333_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2035333_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2035333_44	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2035333_46	PHROG	phrog_6058	NA	unknown function
UHGV-2035333_46	UniRef90	UniRef90_UPI000D0EB5B4	DNA-binding protein	NA
UHGV-2035333_46	eggNOG-mapper	1460635.JCM19038_3443	NA	NA
UHGV-2035333_46	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-2035333_47	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2035333_47	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2035333_47	UniRef90	UniRef90_A0A1C5P786	Phage anti-repressor protein	NA
UHGV-2035333_47	eggNOG-mapper	1414720.CBYM010000005_gene1349	Phage antirepressor protein KilAC domain	NA
UHGV-2035333_47	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2035333_47	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2035333_47	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2035333_47	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2035333_50	UniRef90	UniRef90_R6DVV1	Conserved domain protein	NA
UHGV-2035333_50	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-2035333_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2035333_50	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-2035333_51	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2035333_51	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2035333_51	UniRef90	UniRef90_A0A7X5E0L6	XRE family transcriptional regulator	NA
UHGV-2035333_51	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-2035333_51	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2035333_51	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2035333_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2035333_51	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2035333_52	KOfam	K14059	int; integrase	NA
UHGV-2035333_52	PHROG	phrog_1	integrase	integration and excision
UHGV-2035333_52	UniRef90	UniRef90_UPI000D0ECE9F	site-specific integrase	NA
UHGV-2035333_52	eggNOG-mapper	411471.SUBVAR_04379	Belongs to the 'phage' integrase family	NA
UHGV-2035333_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2035333_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2035333_52	Structural annotation	PF00589, MF_01808, TIGR02224, COG4973	NA	NA