UHGV-2035372

Genome information

Genome length 39,679 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-2035372
vOTU ID	vOTU-009148
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029340\|Ga0243727_1000216\|provirus_21371_61049
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.47
Jumbo phage	No

Genome content
Genome length	39,679 bps
GC content	42.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	86.60%
Average CDS length	550.05 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2035372_1	PHROG	phrog_918	NA	unknown function
UHGV-2035372_1	UniRef90	UniRef90_UPI001E3E9930	NA	NA
UHGV-2035372_1	eggNOG-mapper	413066.A1EAE7_9CAUD	NA	NA
UHGV-2035372_1	Pfam	PF19791	NA	DUF6275
UHGV-2035372_1	Structural annotation	PF19791	NA	NA
UHGV-2035372_2	PHROG	phrog_1865	NA	unknown function
UHGV-2035372_2	Structural annotation	PF07073, MF_00436, NF037951, COG4568	NA	NA
UHGV-2035372_3	UniRef90	UniRef90_A0A421BDH9	Ntox50 domain-containing protein (Fragment)	NA
UHGV-2035372_3	eggNOG-mapper	663952.SDD27957_07295	NA	NA
UHGV-2035372_4	PHROG	phrog_6332	NA	unknown function
UHGV-2035372_4	UniRef90	UniRef90_A0A7Y6RXM6	Cys_rich_CPCC domain-containing protein	NA
UHGV-2035372_4	eggNOG-mapper	883110.HMPREF9260_01700	Cysteine-rich CPCC	NA
UHGV-2035372_4	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-2035372_7	eggNOG-mapper	1069534.LRC_07460	NA	NA
UHGV-2035372_8	KOfam	K19220	cwlS; peptidoglycan DL-endopeptidase CwlS [EC:3.4.-.-]	NA
UHGV-2035372_8	PHROG	phrog_291	endolysin	lysis
UHGV-2035372_8	UniRef90	UniRef90_UPI001F252DE1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2035372_8	eggNOG-mapper	1069534.LRC_07430	Glycosyl hydrolases family 25	NA
UHGV-2035372_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2035372_8	Pfam	PF01476	LysM domain	LysM
UHGV-2035372_8	NCBIFam	TIGR02899.1	SafA/ExsA family spore coat assembly protein	NA
UHGV-2035372_8	COG	COG1388	LysM repeat	NA
UHGV-2035372_8	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2035372_9	PHROG	phrog_13404	holin	lysis
UHGV-2035372_9	UniRef90	UniRef90_UPI0002E4B3D8	phage holin	NA
UHGV-2035372_9	eggNOG-mapper	278197.PEPE_0983	Bacteriophage holin	NA
UHGV-2035372_9	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2035372_9	COG	COG5546	NA	NA
UHGV-2035372_10	PHROG	phrog_1009	NA	unknown function
UHGV-2035372_11	UniRef90	UniRef90_A0A6A8GSS2	XkdX family protein	NA
UHGV-2035372_11	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2035372_11	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2035372_12	PHROG	phrog_1766	tail fiber protein	tail
UHGV-2035372_12	UniRef90	UniRef90_UPI0013708FC6	coiled-coil domain-containing protein 22	NA
UHGV-2035372_14	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-2035372_14	PHROG	phrog_5073	tail fiber protein	tail
UHGV-2035372_14	UniRef90	UniRef90_UPI001CDC1E23	collagen-like protein	NA
UHGV-2035372_14	eggNOG-mapper	1151292.QEW_0665	NA	NA
UHGV-2035372_14	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2035372_15	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2035372_15	PHROG	phrog_6320	tail fiber protein	tail
UHGV-2035372_15	UniRef90	UniRef90_UPI001CDBB667	collagen-like protein	NA
UHGV-2035372_15	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2035372_16	PHROG	phrog_14448	NA	unknown function
UHGV-2035372_16	UniRef90	UniRef90_A0A8B5GZK2	BppU_IgG domain-containing protein	NA
UHGV-2035372_16	eggNOG-mapper	1234679.BN424_2128	NA	NA
UHGV-2035372_17	KOfam	K07273	acm; lysozyme	NA
UHGV-2035372_17	PHROG	phrog_3558	tail protein	tail
UHGV-2035372_17	UniRef90	UniRef90_F7R2Y6	Prophage_tail domain-containing protein	NA
UHGV-2035372_17	eggNOG-mapper	1234679.BN424_2612	Prophage endopeptidase tail	NA
UHGV-2035372_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2035372_17	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2035372_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2035372_17	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2035372_17	Structural annotation	PF06605, PF01183, PF21683, MF_00729, TIGR01665, NF002575, COG4926, COG3757	NA	NA
UHGV-2035372_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2035372_18	UniRef90	UniRef90_A0A1K1KNS1	Prophage Lp1 protein 51	NA
UHGV-2035372_18	eggNOG-mapper	1234679.BN424_2130	phage tail	NA
UHGV-2035372_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-2035372_18	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-2035372_19	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-2035372_19	UniRef90	UniRef90_A0A6A8H663	Transglycosylase SLT domain-containing protein	NA
UHGV-2035372_19	eggNOG-mapper	762051.LKI_09725	phage tail tape measure protein	NA
UHGV-2035372_19	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2035372_19	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-2035372_19	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2035372_19	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2035372_19	Structural annotation	PF20155, TIGR01760, NF012014, COG3941, COG3953	NA	NA
UHGV-2035372_20	PHROG	phrog_706	NA	unknown function
UHGV-2035372_20	UniRef90	UniRef90_UPI0001B2AE23	Gp15 family bacteriophage protein	NA
UHGV-2035372_20	eggNOG-mapper	1423767.BALU01000006_gene766	Bacteriophage Gp15 protein	NA
UHGV-2035372_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2035372_20	Structural annotation	PF06854	NA	NA
UHGV-2035372_21	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-2035372_21	UniRef90	UniRef90_C9AN01	Predicted protein	NA
UHGV-2035372_21	eggNOG-mapper	1104325.M7W_1363	NA	NA
UHGV-2035372_21	Structural annotation	PF10666	NA	NA
UHGV-2035372_22	PHROG	phrog_820	major tail protein	tail
UHGV-2035372_22	UniRef90	UniRef90_UPI0015DF72F5	phage capsid protein	NA
UHGV-2035372_22	eggNOG-mapper	1423790.BN53_04200	domain, Protein	NA
UHGV-2035372_22	COG	COG5492	NA	NA
UHGV-2035372_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2035372_23	PHROG	phrog_913	minor head protein	head and packaging
UHGV-2035372_23	UniRef90	UniRef90_A0A3Q9VCS5	Minor capsid protein	NA
UHGV-2035372_23	eggNOG-mapper	1423790.BN53_04205	Minor capsid protein from bacteriophage	NA
UHGV-2035372_23	Structural annotation	PF12691	NA	NA
UHGV-2035372_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2035372_24	UniRef90	UniRef90_A0A222W3P8	Capsid protein	NA
UHGV-2035372_24	eggNOG-mapper	1423790.BN53_04210	Minor capsid protein	NA
UHGV-2035372_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2035372_24	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-2035372_25	PHROG	phrog_793	head-tail adaptor	connector
UHGV-2035372_25	UniRef90	UniRef90_A0A222W348	Minor capsid protein	NA
UHGV-2035372_25	eggNOG-mapper	1423767.BALU01000006_gene771	Minor capsid protein	NA
UHGV-2035372_25	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-2035372_25	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2035372_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2035372_26	UniRef90	UniRef90_Q5YA68	42	NA
UHGV-2035372_26	eggNOG-mapper	1423767.BALU01000006_gene772	NA	NA
UHGV-2035372_27	PHROG	phrog_247	major head protein	head and packaging
UHGV-2035372_27	UniRef90	UniRef90_A0A0R2A8A8	Minor capsid protein	NA
UHGV-2035372_27	eggNOG-mapper	52979.O03966_9CAUD	viral capsid	NA
UHGV-2035372_27	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-2035372_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2035372_28	UniRef90	UniRef90_UPI001CC74605	phage scaffolding protein	NA
UHGV-2035372_28	eggNOG-mapper	1235801.C822_00660	Phage minor structural protein GP20	NA
UHGV-2035372_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2035372_28	Structural annotation	PF06810	NA	NA
UHGV-2035372_29	PHROG	phrog_27123	NA	unknown function
UHGV-2035372_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2035372_30	UniRef90	UniRef90_F7R2Z7	Minor capsid protein	NA
UHGV-2035372_30	eggNOG-mapper	1423767.BALU01000006_gene776	Phage minor capsid protein 2	NA
UHGV-2035372_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2035372_30	Structural annotation	PF06152	NA	NA
UHGV-2035372_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-2035372_31	UniRef90	UniRef90_A0A0R2A9I7	Minor structural protein gp61	NA
UHGV-2035372_31	eggNOG-mapper	1399941.U3PCP8_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2035372_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2035372_31	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-2035372_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2035372_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2035372_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2035372_32	UniRef90	UniRef90_F7R2Z9	Phage terminase, large subunit, PBSX family	NA
UHGV-2035372_32	eggNOG-mapper	12348.A4L7R3_BPLLH	Pfam:Terminase_3C	NA
UHGV-2035372_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2035372_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2035372_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2035372_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2035372_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2035372_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2035372_33	UniRef90	UniRef90_F7R300	Terminase small subunit	NA
UHGV-2035372_33	eggNOG-mapper	438780.D2KRB6_9CAUD	Terminase small subunit	NA
UHGV-2035372_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2035372_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2035372_34	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-2035372_34	UniRef90	UniRef90_A0A8B2Z7Q9	NA	NA
UHGV-2035372_34	eggNOG-mapper	1203076.CAKF01000006_gene580	Transcriptional regulator, ArpU family	NA
UHGV-2035372_34	Pfam	PF07374	NA	DUF1492
UHGV-2035372_34	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-2035372_34	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-2035372_36	UniRef90	UniRef90_G2SN36	Putative trasposase	NA
UHGV-2035372_36	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2035372_36	Structural annotation	COG2771	NA	NA
UHGV-2035372_43	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2035372_43	UniRef90	UniRef90_A0A848CEG1	NA	NA
UHGV-2035372_43	eggNOG-mapper	1069534.LRC_07200	NA	NA
UHGV-2035372_43	Pfam	PF06356	NA	DUF1064
UHGV-2035372_43	Structural annotation	PF06356, NF033179	NA	NA
UHGV-2035372_48	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2035372_48	UniRef90	UniRef90_UPI001C01EBDD	DnaD domain protein	NA
UHGV-2035372_48	eggNOG-mapper	397287.C807_00106	NA	NA
UHGV-2035372_48	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2035372_48	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2035372_48	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2035372_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2035372_48	Structural annotation	PF02295, TIGR01446, TIGR00373, COG3935	NA	NA
UHGV-2035372_49	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2035372_49	UniRef90	UniRef90_F7R312	NA	NA
UHGV-2035372_49	eggNOG-mapper	557436.Lreu_1138	NA	NA
UHGV-2035372_49	Pfam	PF12684	NA	DUF3799
UHGV-2035372_49	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2035372_49	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-2035372_50	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2035372_50	UniRef90	UniRef90_F7R313	Phage recombination protein Bet	NA
UHGV-2035372_50	eggNOG-mapper	1033740.CAEW01000026_gene507	RecT family	NA
UHGV-2035372_50	Pfam	PF03837	RecT family	RecT
UHGV-2035372_50	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2035372_50	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2035372_50	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2035372_51	PHROG	phrog_22183	NA	unknown function
UHGV-2035372_51	UniRef90	UniRef90_A0A837ITW8	Phage-associated protein	NA
UHGV-2035372_54	UniRef90	UniRef90_A0A0G8G8R2	Putative surface anchor protein	NA
UHGV-2035372_56	PHROG	phrog_823	NA	unknown function
UHGV-2035372_56	UniRef90	UniRef90_A0A6A8GLS5	NA	NA
UHGV-2035372_56	eggNOG-mapper	1069534.LRC_07140	NA	NA
UHGV-2035372_56	Pfam	PF05595	NA	DUF771
UHGV-2035372_56	Structural annotation	PF05595, COG4707	NA	NA
UHGV-2035372_57	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2035372_57	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2035372_57	UniRef90	UniRef90_UPI001C03623C	phage antirepressor KilAC domain-containing protein	NA
UHGV-2035372_57	eggNOG-mapper	908339.HMPREF9265_1641	BRO family, N-terminal domain	NA
UHGV-2035372_57	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2035372_57	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2035372_57	COG	COG3617	Prophage antirepressor	NA
UHGV-2035372_57	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-2035372_58	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2035372_58	UniRef90	UniRef90_E7FPC4	HTH cro/C1-type domain-containing protein	NA
UHGV-2035372_58	eggNOG-mapper	1069534.LRC_07100	NA	NA
UHGV-2035372_58	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-2035372_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2035372_59	UniRef90	UniRef90_A0A2I2A8N7	XRE family transcriptional regulator	NA
UHGV-2035372_59	eggNOG-mapper	1121864.OMO_01357	Helix-turn-helix XRE-family like proteins	NA
UHGV-2035372_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2035372_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2035372_59	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-2035372_60	PHROG	phrog_87	metallo-protease	other
UHGV-2035372_60	UniRef90	UniRef90_A0A1H7Y1P1	Peptidase_M78 domain-containing protein	NA
UHGV-2035372_60	eggNOG-mapper	1449343.JQLQ01000002_gene1559	IrrE N-terminal-like domain	NA
UHGV-2035372_60	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2035372_60	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2035372_60	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2035372_61	PHROG	phrog_17771	NA	unknown function
UHGV-2035372_61	eggNOG-mapper	1423814.HMPREF0549_0537	NA	NA
UHGV-2035372_62	PHROG	phrog_5059	NA	unknown function
UHGV-2035372_62	UniRef90	UniRef90_A0A4S2ERI3	NA	NA
UHGV-2035372_62	eggNOG-mapper	349123.Lreu23DRAFT_4141	NA	NA
UHGV-2035372_62	Pfam	PF08861	NA	DUF1828
UHGV-2035372_62	Pfam	PF08862	NA	DUF1829
UHGV-2035372_62	Structural annotation	PF08862, PF08861, MF_00722, COG3372	NA	NA
UHGV-2035372_63	KOfam	K14059	int; integrase	NA
UHGV-2035372_63	PHROG	phrog_1	integrase	integration and excision
UHGV-2035372_63	UniRef90	UniRef90_A0A0R1QAG8	Site-specific recombinase, phage integrase family	NA
UHGV-2035372_63	eggNOG-mapper	1069534.LRC_07070	Belongs to the 'phage' integrase family	NA
UHGV-2035372_63	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2035372_63	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2035372_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2035372_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2035372_63	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA