UHGV-2035994

Genome information

vOTU vOTU-021924

Genome length 29,379 bps

CDS count 45

Completeness 64.78% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-2035994
vOTU ID	vOTU-021924
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029336\|Ga0243752_101329
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.13
Jumbo phage	No

Genome content
Genome length	29,379 bps
GC content	40.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.59%
Average CDS length	595.07 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2035994_1	PHROG	phrog_20016	NA	unknown function
UHGV-2035994_1	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2035994_1	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2035994_2	PHROG	phrog_28802	NA	unknown function
UHGV-2035994_2	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-2035994_3	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2035994_3	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-2035994_3	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-2035994_3	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2035994_4	PHROG	phrog_544	major head protein	head and packaging
UHGV-2035994_4	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-2035994_4	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-2035994_4	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2035994_4	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2035994_5	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2035994_5	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2035994_6	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2035994_6	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-2035994_6	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-2035994_6	Structural annotation	PF14359	NA	NA
UHGV-2035994_7	PHROG	phrog_1129	holin	lysis
UHGV-2035994_7	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-2035994_7	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2035994_7	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2035994_7	Structural annotation	PF06946	NA	NA
UHGV-2035994_8	PHROG	phrog_3366	NA	unknown function
UHGV-2035994_8	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-2035994_8	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2035994_10	PHROG	phrog_3266	tail completion	connector
UHGV-2035994_10	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2035994_10	Structural annotation	PF12691	NA	NA
UHGV-2035994_11	PHROG	phrog_3099	NA	unknown function
UHGV-2035994_11	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-2035994_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2035994_12	PHROG	phrog_11299	NA	unknown function
UHGV-2035994_12	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-2035994_12	Structural annotation	PF10666	NA	NA
UHGV-2035994_13	PHROG	phrog_706	NA	unknown function
UHGV-2035994_13	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-2035994_13	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-2035994_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2035994_13	Structural annotation	PF06854	NA	NA
UHGV-2035994_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2035994_14	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-2035994_14	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-2035994_14	COG	COG1511	NA	NA
UHGV-2035994_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2035994_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2035994_16	PHROG	phrog_6616	tail protein	tail
UHGV-2035994_16	UniRef90	UniRef90_A0A2V2D052	Peptidase S74 domain-containing protein	NA
UHGV-2035994_16	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-2035994_16	COG	COG4926	Phage-related protein	NA
UHGV-2035994_16	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA
UHGV-2035994_17	Structural annotation	PF20986	NA	NA
UHGV-2035994_19	PHROG	phrog_9589	endolysin	lysis
UHGV-2035994_19	UniRef90	UniRef90_UPI0009315CF1	SH3 domain-containing protein	NA
UHGV-2035994_19	eggNOG-mapper	476272.RUMHYD_03304	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-2035994_19	Pfam	PF05257	CHAP domain	CHAP
UHGV-2035994_19	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2035994_19	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2035994_19	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-2035994_20	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2035994_20	PHROG	phrog_95	integrase	integration and excision
UHGV-2035994_20	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-2035994_20	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-2035994_20	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2035994_20	Pfam	PF07508	Recombinase	Recombinase
UHGV-2035994_20	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2035994_20	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2035994_20	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2035994_21	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-2035994_21	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-2035994_21	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-2035994_21	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-2035994_21	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-2035994_22	UniRef90	UniRef90_UPI001D0E5D20	CopG family transcriptional regulator	NA
UHGV-2035994_22	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-2035994_23	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2035994_23	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2035994_23	UniRef90	UniRef90_UPI00156F56E8	ORF6C domain-containing protein	NA
UHGV-2035994_23	eggNOG-mapper	658655.HMPREF0988_02543	Phage regulatory protein	NA
UHGV-2035994_23	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2035994_23	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2035994_23	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2035994_23	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-2035994_26	UniRef90	UniRef90_A0A4Q5ERT3	XRE family transcriptional regulator	NA
UHGV-2035994_26	eggNOG-mapper	397290.C810_01441	Helix-turn-helix XRE-family like proteins	NA
UHGV-2035994_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2035994_26	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-2035994_28	Structural annotation	PF21441, COG1846	NA	NA
UHGV-2035994_33	PHROG	phrog_7964	NA	unknown function
UHGV-2035994_33	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-2035994_33	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-2035994_33	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-2035994_33	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-2035994_33	Structural annotation	MF_00523, NF040481, COG1043	NA	NA
UHGV-2035994_38	Structural annotation	NF011879	NA	NA
UHGV-2035994_39	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-2035994_40	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2035994_40	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-2035994_40	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-2035994_40	Pfam	PF13479	AAA domain	AAA_24
UHGV-2035994_40	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2035994_41	PHROG	phrog_18107	NA	unknown function
UHGV-2035994_41	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-2035994_41	Structural annotation	PF05037	NA	NA
UHGV-2035994_42	PHROG	phrog_28936	NA	unknown function
UHGV-2035994_42	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-2035994_42	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-2035994_43	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2035994_43	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-2035994_43	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-2035994_43	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2035994_43	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-2035994_44	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2035994_44	PHROG	phrog_11992	NA	unknown function
UHGV-2035994_44	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-2035994_44	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-2035994_44	PADLOC	drt-UG29	DRT	DRT
UHGV-2035994_44	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2035994_44	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2035994_44	Structural annotation	PF01807, PF00401	NA	NA
UHGV-2035994_45	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2035994_45	UniRef90	UniRef90_UPI00128B90FA	NA	NA
UHGV-2035994_45	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-2035994_45	Pfam	PF06048	NA	DUF927
UHGV-2035994_45	COG	COG5519	NA	NA