UHGV-2036001

Genome information

Genome length 38,676 bps

CDS count 52

Completeness 93.79% (high-quality)

geNomad score 0.9701

Prediction confidence Confident

Genome information
Genome ID	UHGV-2036001
vOTU ID	vOTU-067765
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029336\|Ga0243752_100526\|provirus_119_48757
BioSample	SAMN05971455
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.79% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9701
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	84.64
Jumbo phage	No

Genome content
Genome length	38,676 bps
GC content	45.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.32%
Average CDS length	690.87 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2036001_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2036001_1	PHROG	phrog_3088	amidase	lysis
UHGV-2036001_1	UniRef90	UniRef90_UPI001C025321	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2036001_1	eggNOG-mapper	478749.BRYFOR_07564	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2036001_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2036001_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2036001_1	COG	COG3087	Cell division protein FtsN	NA
UHGV-2036001_1	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA
UHGV-2036001_2	PHROG	phrog_1129	holin	lysis
UHGV-2036001_2	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-2036001_2	eggNOG-mapper	1232453.BAIF02000030_gene2527	NA	NA
UHGV-2036001_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2036001_2	Structural annotation	PF16079	NA	NA
UHGV-2036001_3	PHROG	phrog_4105	NA	unknown function
UHGV-2036001_3	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-2036001_5	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-2036001_5	PHROG	phrog_9478	minor tail protein	tail
UHGV-2036001_5	UniRef90	UniRef90_A0A373P409	Peptidase S74 domain-containing protein	NA
UHGV-2036001_5	eggNOG-mapper	543734.LCABL_13420	cellulase activity	NA
UHGV-2036001_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2036001_5	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-2036001_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2036001_5	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2036001_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2036001_5	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2036001_5	Structural annotation	PF14594, PF00529, TIGR01665, TIGR02971, COG4926	NA	NA
UHGV-2036001_6	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2036001_6	UniRef90	UniRef90_A0A174PQE5	Phage-related protein	NA
UHGV-2036001_6	eggNOG-mapper	476272.RUMHYD_02864	NA	NA
UHGV-2036001_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2036001_6	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2036001_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-2036001_6	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-2036001_7	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2036001_7	UniRef90	UniRef90_A0A174PKR4	Phage-related protein	NA
UHGV-2036001_7	eggNOG-mapper	536233.CLO_2822	Phage tail tape measure protein, TP901 family	NA
UHGV-2036001_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2036001_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2036001_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2036001_7	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2036001_8	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-2036001_8	UniRef90	UniRef90_A0A0K9N8J7	NA	NA
UHGV-2036001_8	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-2036001_9	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2036001_9	UniRef90	UniRef90_A0A174PQ19	NA	NA
UHGV-2036001_9	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-2036001_9	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2036001_9	Structural annotation	PF12363	NA	NA
UHGV-2036001_10	PHROG	phrog_238	major tail protein	tail
UHGV-2036001_10	UniRef90	UniRef90_A0A174PKY3	Phage major tail protein, TP901-1 family	NA
UHGV-2036001_10	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-2036001_10	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2036001_10	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2036001_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2036001_11	PHROG	phrog_176	tail terminator	connector
UHGV-2036001_11	UniRef90	UniRef90_UPI001E62787A	NA	NA
UHGV-2036001_11	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-2036001_11	Structural annotation	PF11367	NA	NA
UHGV-2036001_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2036001_12	UniRef90	UniRef90_A0A174PPX0	Phage protein, HK97 gp10 family	NA
UHGV-2036001_12	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2036001_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2036001_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2036001_12	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2036001_13	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2036001_13	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-2036001_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2036001_14	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2036001_14	UniRef90	UniRef90_A0A174PRY0	Phage gp6-like head-tail connector protein	NA
UHGV-2036001_14	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-2036001_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2036001_14	Structural annotation	PF05135	NA	NA
UHGV-2036001_15	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-2036001_15	UniRef90	UniRef90_UPI0018F16521	Rho termination protein	NA
UHGV-2036001_15	eggNOG-mapper	1197953.I6T7M8_9CAUD	DNA-dependent transcription, termination	NA
UHGV-2036001_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-2036001_16	UniRef90	UniRef90_A0A174PKI4	S-l_SbsC_C domain-containing protein	NA
UHGV-2036001_16	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-2036001_16	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2036001_16	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2036001_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2036001_17	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-2036001_17	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-2036001_17	Pfam	PF14265	NA	DUF4355
UHGV-2036001_17	Structural annotation	PF14265	NA	NA
UHGV-2036001_18	KOfam	K07584	NA	NA
UHGV-2036001_18	PHROG	phrog_4478	peptidase	other
UHGV-2036001_18	UniRef90	UniRef90_A0A373P5W7	Ribosomal-processing cysteine protease Prp	NA
UHGV-2036001_18	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-2036001_18	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2036001_18	COG	COG2868	NA	NA
UHGV-2036001_18	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2036001_19	PHROG	phrog_3675	NA	unknown function
UHGV-2036001_19	UniRef90	UniRef90_A0A173ZDX5	YjcQ protein	NA
UHGV-2036001_19	eggNOG-mapper	1235796.C815_00922	YjcQ protein	NA
UHGV-2036001_19	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2036001_19	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-2036001_20	PHROG	phrog_3675	NA	unknown function
UHGV-2036001_20	UniRef90	UniRef90_A0A174SAX8	YjcQ protein	NA
UHGV-2036001_20	eggNOG-mapper	1118055.CAGU01000029_gene13	YjcQ protein	NA
UHGV-2036001_20	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2036001_20	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-2036001_21	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2036001_21	UniRef90	UniRef90_A0A396P1E8	Phage_Mu_F domain-containing protein	NA
UHGV-2036001_21	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2036001_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2036001_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2036001_21	COG	COG2369	NA	NA
UHGV-2036001_21	Structural annotation	PF04233, PF18825, TIGR01641, COG2369	NA	NA
UHGV-2036001_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-2036001_22	UniRef90	UniRef90_UPI0015D3CC14	phage portal protein	NA
UHGV-2036001_22	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-2036001_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2036001_22	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2036001_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2036001_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2036001_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2036001_23	UniRef90	UniRef90_UPI001897BF4F	PBSX family phage terminase large subunit	NA
UHGV-2036001_23	eggNOG-mapper	476272.RUMHYD_02845	Phage terminase, large subunit, PBSX family	NA
UHGV-2036001_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2036001_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2036001_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2036001_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-2036001_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2036001_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2036001_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2036001_24	UniRef90	UniRef90_A0A417WXA6	Terminase small subunit	NA
UHGV-2036001_24	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-2036001_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2036001_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2036001_24	Structural annotation	PF03592	NA	NA
UHGV-2036001_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2036001_25	UniRef90	UniRef90_A0A174SAH0	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-2036001_25	eggNOG-mapper	1235792.C808_05326	NA	NA
UHGV-2036001_25	Structural annotation	PF02996	NA	NA
UHGV-2036001_26	eggNOG-mapper	469596.HMPREF9488_02297	NA	NA
UHGV-2036001_27	PHROG	phrog_1578	NA	unknown function
UHGV-2036001_29	Structural annotation	PF02796, NF040595	NA	NA
UHGV-2036001_30	PHROG	phrog_9804	NA	unknown function
UHGV-2036001_30	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-2036001_30	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-2036001_30	AcrCatalog	cluster_137185	NA	NA
UHGV-2036001_30	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2036001_30	Structural annotation	PF11417	NA	NA
UHGV-2036001_31	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2036001_31	UniRef90	UniRef90_A0A174S3H8	Phage replisome organizer, putative, N-terminal region	NA
UHGV-2036001_31	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-2036001_31	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2036001_31	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2036001_31	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-2036001_32	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2036001_32	UniRef90	UniRef90_A0A416AFS0	NA	NA
UHGV-2036001_32	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-2036001_32	Pfam	PF06356	NA	DUF1064
UHGV-2036001_32	Structural annotation	PF06356	NA	NA
UHGV-2036001_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2036001_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2036001_33	UniRef90	UniRef90_A0A174S775	Single-stranded DNA-binding protein	NA
UHGV-2036001_33	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2036001_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2036001_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2036001_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2036001_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2036001_33	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2036001_34	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2036001_34	UniRef90	UniRef90_A0A174S6P0	ERF superfamily	NA
UHGV-2036001_34	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-2036001_34	Pfam	PF04404	ERF superfamily	ERF
UHGV-2036001_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2036001_34	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2036001_35	PHROG	phrog_674	NA	unknown function
UHGV-2036001_35	UniRef90	UniRef90_A0A416ZL44	NA	NA
UHGV-2036001_35	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-2036001_35	Pfam	PF07083	NA	DUF1351
UHGV-2036001_35	Structural annotation	PF07083	NA	NA
UHGV-2036001_38	PHROG	phrog_10693	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-2036001_38	eggNOG-mapper	428127.EUBDOL_01565	cellulase activity	NA
UHGV-2036001_38	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2036001_41	eggNOG-mapper	883156.HMPREF9282_01215	NA	NA
UHGV-2036001_41	Structural annotation	NF040556	NA	NA
UHGV-2036001_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2036001_43	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2036001_43	UniRef90	UniRef90_A0A174S919	Phage anti-repressor protein	NA
UHGV-2036001_43	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-2036001_43	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2036001_43	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2036001_43	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2036001_43	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2036001_44	Structural annotation	PF21138, NF009630	NA	NA
UHGV-2036001_45	eggNOG-mapper	391612.CY0110_26929	NA	NA
UHGV-2036001_45	Structural annotation	PF16538	NA	NA
UHGV-2036001_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2036001_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2036001_48	UniRef90	UniRef90_A0A174S783	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-2036001_48	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-2036001_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2036001_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2036001_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2036001_50	UniRef90	UniRef90_A0A1M6VG00	Phage putative head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2036001_50	eggNOG-mapper	699248.SRA_01834	NA	NA
UHGV-2036001_51	PHROG	phrog_1847	NA	unknown function
UHGV-2036001_51	UniRef90	UniRef90_A0A174S171	Membrane-bound metallopeptidase	NA
UHGV-2036001_51	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-2036001_51	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2036001_51	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2036001_51	Structural annotation	PF13250, NF041454	NA	NA
UHGV-2036001_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2036001_52	PHROG	phrog_95	integrase	integration and excision
UHGV-2036001_52	UniRef90	UniRef90_A0A174S1P9	Resolvase, N terminal domain	NA
UHGV-2036001_52	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2036001_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2036001_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-2036001_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2036001_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2036001_52	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA