UHGV-2036022

Genome information

Genome length 25,463 bps

CDS count 36

Completeness 71.87% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-2036022
vOTU ID	vOTU-024778
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029256\|Ga0168827_100491\|provirus_29706_55168
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.71
Jumbo phage	No

Genome content
Genome length	25,463 bps
GC content	45.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	96.01%
Average CDS length	681.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2036022_2	PHROG	phrog_4575	NA	unknown function
UHGV-2036022_2	eggNOG-mapper	575615.HMPREF0670_02458	NA	NA
UHGV-2036022_3	KOfam	K07273	acm; lysozyme	NA
UHGV-2036022_3	PHROG	phrog_291	endolysin	lysis
UHGV-2036022_3	UniRef90	UniRef90_A0A1C6IMI8	Autolytic lysozyme	NA
UHGV-2036022_3	eggNOG-mapper	246199.CUS_5914	hydrolase, family 25	NA
UHGV-2036022_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2036022_3	Pfam	PF01476	LysM domain	LysM
UHGV-2036022_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2036022_3	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2036022_4	PHROG	phrog_1863	NA	unknown function
UHGV-2036022_4	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2036022_5	PHROG	phrog_13256	NA	unknown function
UHGV-2036022_5	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-2036022_6	PHROG	phrog_134	NA	unknown function
UHGV-2036022_6	UniRef90	UniRef90_A0A373VFP4	XkdX family protein	NA
UHGV-2036022_6	eggNOG-mapper	1298920.KI911353_gene543	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2036022_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2036022_6	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2036022_8	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-2036022_8	Structural annotation	PF10651	NA	NA
UHGV-2036022_10	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-2036022_10	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-2036022_10	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2036022_11	PHROG	phrog_1194	NA	unknown function
UHGV-2036022_11	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-2036022_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2036022_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2036022_12	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-2036022_12	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-2036022_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2036022_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2036022_13	PHROG	phrog_706	NA	unknown function
UHGV-2036022_13	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-2036022_13	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-2036022_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2036022_13	Structural annotation	PF06854	NA	NA
UHGV-2036022_14	PHROG	phrog_11299	NA	unknown function
UHGV-2036022_14	Structural annotation	PF20378	NA	NA
UHGV-2036022_15	PHROG	phrog_3099	NA	unknown function
UHGV-2036022_15	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2036022_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2036022_16	PHROG	phrog_3266	tail completion	connector
UHGV-2036022_16	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-2036022_16	Structural annotation	PF20765	NA	NA
UHGV-2036022_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2036022_17	UniRef90	UniRef90_UPI00143BEF55	minor capsid protein	NA
UHGV-2036022_17	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2036022_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2036022_17	Structural annotation	PF11114	NA	NA
UHGV-2036022_18	PHROG	phrog_3366	NA	unknown function
UHGV-2036022_18	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2036022_18	Pfam	PF20536	NA	DUF6751
UHGV-2036022_18	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2036022_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2036022_19	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2036022_19	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-2036022_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-2036022_20	UniRef90	UniRef90_R6T873	Major head protein	NA
UHGV-2036022_20	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-2036022_20	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2036022_20	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2036022_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2036022_21	UniRef90	UniRef90_R6U550	Phage minor structural protein GP20	NA
UHGV-2036022_21	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2036022_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2036022_21	Structural annotation	PF06810	NA	NA
UHGV-2036022_22	Structural annotation	PF12305	NA	NA
UHGV-2036022_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2036022_23	UniRef90	UniRef90_R6SXL7	Phage minor capsid protein 2	NA
UHGV-2036022_23	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-2036022_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2036022_23	COG	COG2369	NA	NA
UHGV-2036022_23	Structural annotation	PF06152	NA	NA
UHGV-2036022_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2036022_24	UniRef90	UniRef90_R6TDI6	Phage portal protein SPP1 Gp6-like	NA
UHGV-2036022_24	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2036022_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2036022_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2036022_25	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-2036022_25	UniRef90	UniRef90_A0A1C6IMR2	Phage terminase, large subunit, PBSX family	NA
UHGV-2036022_25	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2036022_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2036022_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2036022_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2036022_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2036022_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2036022_26	KOfam	K09161	NA	NA
UHGV-2036022_26	PHROG	phrog_6084	NA	unknown function
UHGV-2036022_26	UniRef90	UniRef90_UPI00189BAEC5	YfbU family protein	NA
UHGV-2036022_26	eggNOG-mapper	536233.CLO_2529	Belongs to the UPF0304 family	NA
UHGV-2036022_26	Pfam	PF03887	YfbU domain	YfbU
UHGV-2036022_26	NCBIFam	NF003936.2	YfbU family protein	NA
UHGV-2036022_26	COG	COG3013	NA	NA
UHGV-2036022_26	Structural annotation	PF03887, MF_00762, NF003936, COG3013	NA	NA
UHGV-2036022_27	UniRef90	UniRef90_A0A5R9MHA3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2036022_27	Structural annotation	PF07374	NA	NA
UHGV-2036022_29	PHROG	phrog_9958	NA	unknown function
UHGV-2036022_29	UniRef90	UniRef90_A0A356CXW0	NA	NA
UHGV-2036022_29	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-2036022_29	Pfam	PF19789	NA	DUF6273
UHGV-2036022_29	Structural annotation	PF19789	NA	NA
UHGV-2036022_30	UniRef90	UniRef90_A0A373XZK2	NA	NA
UHGV-2036022_30	eggNOG-mapper	1160721.RBI_I01194	NA	NA
UHGV-2036022_30	Pfam	PF14199	NA	DUF4317
UHGV-2036022_30	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-2036022_31	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-2036022_31	UniRef90	UniRef90_A0A373V3T6	NA	NA
UHGV-2036022_31	eggNOG-mapper	2754.EH55_06950	NA	NA
UHGV-2036022_31	Pfam	PF12961	NA	DUF3850
UHGV-2036022_31	Structural annotation	PF12961, MF_00771, NF003443, COG4043	NA	NA
UHGV-2036022_32	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2036022_32	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2036022_32	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2036022_32	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2036022_32	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2036022_35	PHROG	phrog_824	NA	unknown function
UHGV-2036022_35	UniRef90	UniRef90_A0A373V639	VRR-NUC domain-containing protein	NA
UHGV-2036022_35	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-2036022_35	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2036022_35	Structural annotation	PF08774	NA	NA
UHGV-2036022_36	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-2036022_36	COG	COG1061	Superfamily II DNA or RNA helicase	NA