UHGV-2036316

Genome information

Genome length 29,229 bps

CDS count 36

Completeness 72.92% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-2036316
vOTU ID	vOTU-027055
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029353\|Ga0243845_100187\|provirus_15965_45193
BioSample	SAMN05971552
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.91
Jumbo phage	No

Genome content
Genome length	29,229 bps
GC content	44.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	89.72%
Average CDS length	730.75 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2036316_1	KOfam	K03205	virD4, lvhD4; type IV secretion system protein VirD4 [EC:7.4.2.8]	NA
UHGV-2036316_1	UniRef90	UniRef90_A0A6N2W5G9	Type IV secretory system Conjugative DNA transfer	NA
UHGV-2036316_1	eggNOG-mapper	742740.HMPREF9474_00051	TraM recognition site of TraD and TraG	NA
UHGV-2036316_1	Pfam	PF02534	Type IV secretory system Conjugative DNA transfer	T4SS-DNA_transf
UHGV-2036316_1	COG	COG3505	Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase	NA
UHGV-2036316_2	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2036316_2	PHROG	phrog_216	integrase	integration and excision
UHGV-2036316_2	UniRef90	UniRef90_A0A6N2W5D6	Tyrosine recombinase XerD	NA
UHGV-2036316_2	eggNOG-mapper	742740.HMPREF9474_00053	integrase family	NA
UHGV-2036316_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2036316_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2036316_3	UniRef90	UniRef90_A0A3C1J292	NA	NA
UHGV-2036316_3	eggNOG-mapper	1235800.C819_00236	NA	NA
UHGV-2036316_3	Pfam	PF14199	NA	DUF4317
UHGV-2036316_3	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-2036316_4	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2036316_4	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2036316_4	UniRef90	UniRef90_A0A3R5ZUS2	DNA adenine methylase	NA
UHGV-2036316_4	eggNOG-mapper	411468.CLOSCI_00302	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2036316_4	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-2036316_4	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2036316_4	COG	COG0338	DNA-adenine methylase	NA
UHGV-2036316_4	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-2036316_8	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2036316_8	PHROG	phrog_1	integrase	integration and excision
UHGV-2036316_8	UniRef90	UniRef90_A0A174WH41	Tyrosine recombinase XerC	NA
UHGV-2036316_8	eggNOG-mapper	411468.CLOSCI_00297	Belongs to the 'phage' integrase family	NA
UHGV-2036316_8	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-2036316_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2036316_8	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2036316_8	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2036316_10	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2036316_10	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2036316_10	UniRef90	UniRef90_UPI0015702ED4	terminase small subunit	NA
UHGV-2036316_10	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-2036316_10	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2036316_10	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2036316_10	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2036316_10	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2036316_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2036316_11	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2036316_11	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-2036316_11	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-2036316_11	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2036316_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2036316_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-2036316_11	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2036316_12	PHROG	phrog_533	portal protein	head and packaging
UHGV-2036316_12	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-2036316_12	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-2036316_12	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2036316_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2036316_13	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2036316_13	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-2036316_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2036316_13	COG	COG2369	NA	NA
UHGV-2036316_13	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-2036316_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2036316_15	UniRef90	UniRef90_UPI00164B0393	phage scaffolding protein	NA
UHGV-2036316_15	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-2036316_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2036316_15	Structural annotation	PF06810	NA	NA
UHGV-2036316_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-2036316_16	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2036316_16	eggNOG-mapper	471855.Shel_14060	NA	NA
UHGV-2036316_16	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2036316_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2036316_19	PHROG	phrog_3366	NA	unknown function
UHGV-2036316_19	eggNOG-mapper	1280692.AUJL01000004_gene843	NA	NA
UHGV-2036316_19	Pfam	PF20536	NA	DUF6751
UHGV-2036316_19	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-2036316_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2036316_20	UniRef90	UniRef90_A0A1G4WU41	Minor capsid protein	NA
UHGV-2036316_20	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2036316_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2036316_20	Structural annotation	PF11114	NA	NA
UHGV-2036316_21	PHROG	phrog_3266	tail completion	connector
UHGV-2036316_21	eggNOG-mapper	1151292.QEW_4531	NA	NA
UHGV-2036316_21	Structural annotation	PF12691	NA	NA
UHGV-2036316_22	PHROG	phrog_3099	NA	unknown function
UHGV-2036316_22	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-2036316_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2036316_23	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-2036316_24	PHROG	phrog_706	NA	unknown function
UHGV-2036316_24	UniRef90	UniRef90_R7N4A5	Bacteriophage Gp15 protein	NA
UHGV-2036316_24	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-2036316_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2036316_24	Structural annotation	PF06854	NA	NA
UHGV-2036316_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2036316_25	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-2036316_25	COG	COG5283	Phage-related tail protein	NA
UHGV-2036316_26	PHROG	phrog_1194	NA	unknown function
UHGV-2036316_26	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-2036316_26	Pfam	PF20458	NA	DUF6711
UHGV-2036316_26	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2036316_27	PHROG	phrog_18190	NA	unknown function
UHGV-2036316_27	UniRef90	UniRef90_R7BGL9	NA	NA
UHGV-2036316_27	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-2036316_27	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2036316_29	PHROG	phrog_17196	kinase	other
UHGV-2036316_29	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-2036316_29	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-2036316_30	eggNOG-mapper	1235793.C809_01950	Phage tail-collar fibre protein	NA
UHGV-2036316_30	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2036316_30	Structural annotation	PF08931	NA	NA
UHGV-2036316_31	PHROG	phrog_17180	NA	unknown function
UHGV-2036316_31	eggNOG-mapper	457424.BFAG_02437	NA	NA
UHGV-2036316_31	Structural annotation	PF14282	NA	NA
UHGV-2036316_32	PHROG	phrog_199	holin	lysis
UHGV-2036316_32	UniRef90	UniRef90_A0A3D4HRA5	Holin	NA
UHGV-2036316_32	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-2036316_32	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2036316_32	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2036316_32	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2036316_32	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2036316_33	PHROG	phrog_2649	endolysin	lysis
UHGV-2036316_33	UniRef90	UniRef90_R6C8U0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2036316_33	eggNOG-mapper	411902.CLOBOL_05642	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-2036316_33	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2036316_33	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2036316_33	Structural annotation	COG3409	NA	NA
UHGV-2036316_36	UniRef90	UniRef90_A0A373LVW5	XRE family transcriptional regulator	NA
UHGV-2036316_36	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-2036316_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA