UHGV-2036690

Genome information

Genome length 28,490 bps

CDS count 46

Completeness 81.29% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-2036690
vOTU ID	vOTU-016998
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029235\|Ga0168722_100021\|provirus_191159_225014
BioSample	SAMEA2737703
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.03
Jumbo phage	No

Genome content
Genome length	28,490 bps
GC content	36.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	89.91%
Average CDS length	558.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2036690_1	KOfam	K14059	int; integrase	NA
UHGV-2036690_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2036690_1	UniRef90	UniRef90_UPI000D0ECE9F	site-specific integrase	NA
UHGV-2036690_1	eggNOG-mapper	1235793.C809_00531	Phage integrase family	NA
UHGV-2036690_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2036690_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2036690_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2036690_2	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-2036690_2	UniRef90	UniRef90_A0A374P9F7	Immunity protein	NA
UHGV-2036690_2	eggNOG-mapper	1292035.H476_1527	Host cell surface-exposed lipoprotein	NA
UHGV-2036690_2	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-2036690_2	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2036690_2	Structural annotation	PF07553, MF_01114, NF001062, COG2137	NA	NA
UHGV-2036690_3	PHROG	phrog_1914	NA	unknown function
UHGV-2036690_3	UniRef90	UniRef90_A0A3D4VT22	Peptidase_M78 domain-containing protein	NA
UHGV-2036690_3	eggNOG-mapper	445971.ANASTE_00176	IrrE N-terminal-like domain	NA
UHGV-2036690_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2036690_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2036690_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2036690_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2036690_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2036690_4	UniRef90	UniRef90_UPI001D130085	helix-turn-helix domain-containing protein	NA
UHGV-2036690_4	eggNOG-mapper	1235798.C817_02945	Helix-turn-helix XRE-family like proteins	NA
UHGV-2036690_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2036690_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2036690_4	Structural annotation	PF12844, MF_02017, NF041951, COG3655	NA	NA
UHGV-2036690_5	UniRef90	UniRef90_A0A564THJ6	Helix-turn-helix domain protein	NA
UHGV-2036690_5	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2036690_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2036690_5	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2036690_7	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2036690_7	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-2036690_7	UniRef90	UniRef90_UPI001C0FC1AD	helix-turn-helix domain-containing protein	NA
UHGV-2036690_7	eggNOG-mapper	62977.ACIAD1638	Helix-turn-helix XRE-family like proteins	NA
UHGV-2036690_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2036690_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2036690_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2036690_8	PHROG	phrog_6058	NA	unknown function
UHGV-2036690_9	Pfam	PF04703	FaeA-like protein	FaeA
UHGV-2036690_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2036690_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2036690_11	UniRef90	UniRef90_R6PGX1	Single-stranded DNA-binding protein	NA
UHGV-2036690_11	eggNOG-mapper	1235790.C805_03410	Single-stranded DNA-binding protein	NA
UHGV-2036690_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2036690_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2036690_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2036690_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2036690_11	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2036690_12	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2036690_12	eggNOG-mapper	1174504.AJTN02000006_gene2212	DnaD domain protein	NA
UHGV-2036690_12	Pfam	PF19481	NA	DUF6017
UHGV-2036690_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2036690_12	Structural annotation	PF19481, PF04492, TIGR01610, COG5529	NA	NA
UHGV-2036690_17	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2036690_17	UniRef90	UniRef90_A0A1E3UAI9	MazG domain-containing protein	NA
UHGV-2036690_17	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-2036690_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2036690_23	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-2036690_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2036690_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2036690_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2036690_24	UniRef90	UniRef90_A0A7C6XX43	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2036690_24	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-2036690_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2036690_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2036690_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2036690_27	PHROG	phrog_774	NA	unknown function
UHGV-2036690_27	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2036690_28	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-2036690_28	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-2036690_29	KOfam	K06904	NA	NA
UHGV-2036690_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2036690_29	UniRef90	UniRef90_UPI0006A432D0	HK97 family phage prohead protease	NA
UHGV-2036690_29	eggNOG-mapper	1414720.CBYM010000002_gene573	Phage prohead protease, HK97 family	NA
UHGV-2036690_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2036690_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2036690_29	COG	COG3740	Phage head maturation protease	NA
UHGV-2036690_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2036690_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-2036690_30	UniRef90	UniRef90_UPI001D0FB58C	phage major capsid protein	NA
UHGV-2036690_30	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-2036690_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2036690_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2036690_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2036690_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2036690_31	UniRef90	UniRef90_UPI001896F325	head-tail connector protein	NA
UHGV-2036690_31	eggNOG-mapper	1304866.K413DRAFT_1227	Phage gp6-like head-tail connector protein	NA
UHGV-2036690_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2036690_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2036690_32	Pfam	PF20765	NA	DUF6838
UHGV-2036690_34	PHROG	phrog_1480	tail sheath	tail
UHGV-2036690_34	UniRef90	UniRef90_UPI001EED0A98	phage tail protein	NA
UHGV-2036690_34	eggNOG-mapper	1203606.HMPREF1526_01344	Phage tail sheath C-terminal domain	NA
UHGV-2036690_34	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2036690_34	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2036690_35	PHROG	phrog_365	tail protein	tail
UHGV-2036690_35	UniRef90	UniRef90_UPI0019D38528	phage tail tube protein	NA
UHGV-2036690_35	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-2036690_35	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2036690_35	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2036690_36	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2036690_36	UniRef90	UniRef90_A0A150FR21	Phage terminase, small subunit, P27 family	NA
UHGV-2036690_36	eggNOG-mapper	796940.HMPREF9628_00148	phage terminase small subunit	NA
UHGV-2036690_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2036690_36	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2036690_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2036690_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2036690_38	UniRef90	UniRef90_UPI0018A10FEC	terminase large subunit	NA
UHGV-2036690_38	eggNOG-mapper	742738.HMPREF9460_01363	Phage Terminase	NA
UHGV-2036690_38	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2036690_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2036690_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2036690_38	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2036690_39	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2036690_39	eggNOG-mapper	887325.HMPREF0381_0396	Phage-related minor tail protein	NA
UHGV-2036690_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2036690_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2036690_39	COG	COG5283	Phage-related tail protein	NA
UHGV-2036690_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-2036690_40	UniRef90	UniRef90_UPI001BA54944	phage portal protein	NA
UHGV-2036690_40	eggNOG-mapper	903814.ELI_1297	Phage portal protein	NA
UHGV-2036690_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2036690_40	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2036690_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2036690_40	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2036690_41	KOfam	K19224	lytE, cwlF; peptidoglycan DL-endopeptidase LytE [EC:3.4.-.-]	NA
UHGV-2036690_41	PHROG	phrog_400	tail protein	tail
UHGV-2036690_41	UniRef90	UniRef90_U5S2Z2	NLP/P60 protein	NA
UHGV-2036690_41	eggNOG-mapper	1280698.AUJS01000017_gene1784	NlpC/P60 family	NA
UHGV-2036690_41	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2036690_41	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2036690_42	PHROG	phrog_35892	NA	unknown function
UHGV-2036690_42	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2036690_42	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-2036690_44	PHROG	phrog_199	holin	lysis
UHGV-2036690_44	UniRef90	UniRef90_A0A414P9N2	Holin	NA
UHGV-2036690_44	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-2036690_44	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2036690_44	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2036690_44	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2036690_44	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2036690_45	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2036690_45	PHROG	phrog_670	endolysin	lysis
UHGV-2036690_45	UniRef90	UniRef90_A0A1C5W6P4	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2036690_45	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-2036690_45	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2036690_45	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2036690_45	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA