UHGV-2036744

Genome information

Genome length 24,831 bps

CDS count 29

Completeness 52.62% (medium-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-2036744
vOTU ID	vOTU-023008
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029338\|Ga0243718_1000293\|provirus_37516_62346
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.24
Jumbo phage	No

Genome content
Genome length	24,831 bps
GC content	49.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	94.74%
Average CDS length	815.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2036744_1	UniRef90	UniRef90_A0A6N7IYU3	Cytochrome C	NA
UHGV-2036744_1	eggNOG-mapper	887929.HMP0721_1459	NA	NA
UHGV-2036744_3	UniRef90	UniRef90_UPI0014131DD2	NA	NA
UHGV-2036744_3	Pfam	PF19553	NA	DUF6076
UHGV-2036744_3	Structural annotation	PF19553	NA	NA
UHGV-2036744_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2036744_4	PHROG	phrog_95	integrase	integration and excision
UHGV-2036744_4	UniRef90	UniRef90_UPI00083754DA	recombinase family protein	NA
UHGV-2036744_4	eggNOG-mapper	663278.Ethha_1857	NA	NA
UHGV-2036744_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2036744_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-2036744_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2036744_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2036744_4	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-2036744_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2036744_5	PHROG	phrog_95	integrase	integration and excision
UHGV-2036744_5	UniRef90	UniRef90_UPI000831CA6F	recombinase family protein	NA
UHGV-2036744_5	eggNOG-mapper	663278.Ethha_1856	Resolvase, N terminal domain	NA
UHGV-2036744_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2036744_5	Pfam	PF07508	Recombinase	Recombinase
UHGV-2036744_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2036744_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2036744_5	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2036744_6	PHROG	phrog_2308	NA	unknown function
UHGV-2036744_6	UniRef90	UniRef90_A0A3N0I3U2	RNA polymerase subunit sigma-70	NA
UHGV-2036744_6	eggNOG-mapper	663278.Ethha_1854	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2036744_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2036744_6	Structural annotation	PF06056, COG2771	NA	NA
UHGV-2036744_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2036744_7	PHROG	phrog_1794	amidase	lysis
UHGV-2036744_7	UniRef90	UniRef90_UPI0018979831	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2036744_7	eggNOG-mapper	742741.HMPREF9475_02358	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2036744_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2036744_7	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2036744_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2036744_7	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-2036744_8	PHROG	phrog_21233	NA	unknown function
UHGV-2036744_8	UniRef90	UniRef90_A0A396KE23	Holin	NA
UHGV-2036744_8	eggNOG-mapper	742741.HMPREF9475_02359	COG COG4824 Phage-related holin (Lysis protein)	NA
UHGV-2036744_8	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2036744_8	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2036744_8	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2036744_8	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2036744_10	PHROG	phrog_19291	NA	unknown function
UHGV-2036744_10	eggNOG-mapper	243164.DET1074	NA	NA
UHGV-2036744_10	Structural annotation	PF02191, COG3823	NA	NA
UHGV-2036744_11	UniRef90	UniRef90_UPI0018994E65	discoidin domain-containing protein	NA
UHGV-2036744_11	eggNOG-mapper	243164.DET1075	NA	NA
UHGV-2036744_12	PHROG	phrog_23052	NA	unknown function
UHGV-2036744_12	eggNOG-mapper	483218.BACPEC_01320	NA	NA
UHGV-2036744_12	Structural annotation	PF14879, PF09931, NF033848, TIGR03721, COG3500, COG4935	NA	NA
UHGV-2036744_13	PHROG	phrog_1194	NA	unknown function
UHGV-2036744_13	eggNOG-mapper	483218.BACPEC_01319	NA	NA
UHGV-2036744_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2036744_14	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2036744_14	UniRef90	UniRef90_A0A2T3FP34	Phage tail tape measure protein	NA
UHGV-2036744_14	eggNOG-mapper	742741.HMPREF9475_02364	Phage tail tape measure protein, TP901 family	NA
UHGV-2036744_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2036744_14	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-2036744_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2036744_14	COG	COG5283	Phage-related tail protein	NA
UHGV-2036744_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2036744_15	PHROG	phrog_3033	NA	unknown function
UHGV-2036744_15	eggNOG-mapper	742741.HMPREF9475_02367	NA	NA
UHGV-2036744_16	PHROG	phrog_709	NA	unknown function
UHGV-2036744_16	eggNOG-mapper	742741.HMPREF9475_02368	NA	NA
UHGV-2036744_16	Structural annotation	PF11836	NA	NA
UHGV-2036744_17	PHROG	phrog_88	major tail protein	tail
UHGV-2036744_17	UniRef90	UniRef90_A0A2T3FP07	Phage tail protein	NA
UHGV-2036744_17	eggNOG-mapper	742741.HMPREF9475_02369	phage major tail protein, phi13 family	NA
UHGV-2036744_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2036744_17	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2036744_18	PHROG	phrog_78	tail terminator	connector
UHGV-2036744_18	eggNOG-mapper	742741.HMPREF9475_02370	NA	NA
UHGV-2036744_18	Structural annotation	PF20765	NA	NA
UHGV-2036744_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2036744_19	UniRef90	UniRef90_UPI0011CB9C6E	HK97 gp10 family phage protein	NA
UHGV-2036744_19	eggNOG-mapper	742741.HMPREF9475_02371	COG NOG18351 non supervised orthologous group	NA
UHGV-2036744_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2036744_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2036744_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-2036744_20	UniRef90	UniRef90_A0A2T3FNX9	Head-tail adaptor protein	NA
UHGV-2036744_20	eggNOG-mapper	742741.HMPREF9475_02372	Phage head-tail joining protein	NA
UHGV-2036744_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2036744_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2036744_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2036744_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2036744_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2036744_21	UniRef90	UniRef90_A0A2T3FP12	AraC family transcriptional regulator	NA
UHGV-2036744_21	eggNOG-mapper	742741.HMPREF9475_02373	Phage gp6-like head-tail connector protein	NA
UHGV-2036744_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2036744_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2036744_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2036744_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-2036744_22	UniRef90	UniRef90_A0A2T3FP01	Phage major capsid protein	NA
UHGV-2036744_22	eggNOG-mapper	1265507.KB899637_gene608	capsid protein	NA
UHGV-2036744_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2036744_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2036744_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2036744_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2036744_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2036744_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2036744_23	UniRef90	UniRef90_A0A2T3FP02	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2036744_23	eggNOG-mapper	552396.HMPREF0863_01435	Belongs to the peptidase S14 family	NA
UHGV-2036744_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2036744_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2036744_23	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2036744_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-2036744_24	UniRef90	UniRef90_A0A2T3FP24	Phage portal protein	NA
UHGV-2036744_24	eggNOG-mapper	742741.HMPREF9475_02376	Phage portal protein	NA
UHGV-2036744_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2036744_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2036744_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2036744_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2036744_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2036744_25	UniRef90	UniRef90_A0A1I6KUH9	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2036744_25	eggNOG-mapper	552396.HMPREF0863_01433	large subunit	NA
UHGV-2036744_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2036744_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2036744_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2036744_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2036744_26	PHROG	phrog_4709	NA	unknown function
UHGV-2036744_26	eggNOG-mapper	411490.ANACAC_00741	NA	NA
UHGV-2036744_26	AcrCatalog	cluster_3300	NA	NA
UHGV-2036744_27	PHROG	phrog_21141	NA	unknown function
UHGV-2036744_27	eggNOG-mapper	1235802.C823_05281	NA	NA
UHGV-2036744_27	AcrCatalog	cluster_19223	NA	NA
UHGV-2036744_27	Structural annotation	PF04232, MF_01122, NF003088	NA	NA
UHGV-2036744_28	PHROG	phrog_3782	NA	unknown function
UHGV-2036744_28	UniRef90	UniRef90_U5F804	NA	NA
UHGV-2036744_28	eggNOG-mapper	552396.HMPREF0863_01430	NA	NA
UHGV-2036744_28	Pfam	PF14192	NA	DUF4314
UHGV-2036744_28	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2036744_28	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-2036744_29	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2036744_29	UniRef90	UniRef90_A0A351TM01	Virulence protein (Fragment)	NA
UHGV-2036744_29	eggNOG-mapper	397291.C804_05222	NA	NA