UHGV-2037575

Genome information

Genome length 46,303 bps

CDS count 82

Completeness 99.90% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-2037575
vOTU ID	vOTU-061411
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029316\|Ga0242768_100283\|provirus_26766_75128
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.21
Jumbo phage	No

Genome content
Genome length	46,303 bps
GC content	36.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	82
CDS density	89.13%
Average CDS length	505.68 bps
tRNA count	8
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2037575_1	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-2037575_1	PHROG	phrog_670	endolysin	lysis
UHGV-2037575_1	UniRef90	UniRef90_UPI00156EE520	amidase	NA
UHGV-2037575_1	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-2037575_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2037575_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2037575_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2037575_1	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-2037575_2	PHROG	phrog_962	holin	lysis
UHGV-2037575_2	UniRef90	UniRef90_UPI0015714279	phage holin	NA
UHGV-2037575_2	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-2037575_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2037575_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2037575_2	COG	COG5546	NA	NA
UHGV-2037575_3	eggNOG-mapper	1123075.AUDP01000020_gene1530	Transposase	NA
UHGV-2037575_3	COG	COG4372	NA	NA
UHGV-2037575_4	PHROG	phrog_18444	NA	unknown function
UHGV-2037575_4	UniRef90	UniRef90_A0A4U9RQD7	Peptide chain release factor 2	NA
UHGV-2037575_5	PHROG	phrog_6616	tail protein	tail
UHGV-2037575_5	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-2037575_5	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-2037575_5	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-2037575_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2037575_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2037575_7	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-2037575_7	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-2037575_7	COG	COG5412	Phage-related protein	NA
UHGV-2037575_7	Structural annotation	PF11172	NA	NA
UHGV-2037575_8	PHROG	phrog_706	NA	unknown function
UHGV-2037575_8	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-2037575_8	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-2037575_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2037575_8	Structural annotation	PF06854	NA	NA
UHGV-2037575_9	PHROG	phrog_11299	NA	unknown function
UHGV-2037575_9	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-2037575_9	Structural annotation	PF10666	NA	NA
UHGV-2037575_10	PHROG	phrog_3099	NA	unknown function
UHGV-2037575_10	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-2037575_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2037575_11	PHROG	phrog_3266	tail completion	connector
UHGV-2037575_11	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2037575_11	Structural annotation	PF12691	NA	NA
UHGV-2037575_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2037575_12	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-2037575_12	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2037575_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2037575_12	Structural annotation	PF11114	NA	NA
UHGV-2037575_13	PHROG	phrog_3366	NA	unknown function
UHGV-2037575_13	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-2037575_13	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2037575_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2037575_14	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-2037575_15	PHROG	phrog_247	major head protein	head and packaging
UHGV-2037575_15	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-2037575_15	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-2037575_15	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-2037575_16	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-2037575_16	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2037575_18	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-2037575_19	PHROG	phrog_20016	NA	unknown function
UHGV-2037575_19	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-2037575_19	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2037575_20	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-2037575_22	PHROG	phrog_21718	NA	unknown function
UHGV-2037575_22	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-2037575_23	PHROG	phrog_419	NA	unknown function
UHGV-2037575_23	eggNOG-mapper	1211643.K4K2V0_9CAUD	NA	NA
UHGV-2037575_23	Structural annotation	PF14083	NA	NA
UHGV-2037575_24	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-2037575_25	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-2037575_25	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-2037575_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2037575_26	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-2037575_26	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-2037575_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2037575_26	COG	COG2369	NA	NA
UHGV-2037575_26	Structural annotation	PF06152	NA	NA
UHGV-2037575_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-2037575_28	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-2037575_28	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2037575_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2037575_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2037575_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2037575_29	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-2037575_29	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2037575_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2037575_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2037575_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2037575_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2037575_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2037575_29	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2037575_30	PHROG	phrog_33130	NA	unknown function
UHGV-2037575_30	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2037575_32	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2037575_32	UniRef90	UniRef90_A0A173U068	AP2 domain	NA
UHGV-2037575_32	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-2037575_32	Pfam	PF00847	AP2 domain	AP2
UHGV-2037575_32	Structural annotation	PF18337, PF00847	NA	NA
UHGV-2037575_34	PHROG	phrog_1257	ribosome associated inhibitor A; zinc finger domain	moron, auxiliary metabolic gene and host takeover
UHGV-2037575_34	UniRef90	UniRef90_A0A3E4LX24	XRE family transcriptional regulator	NA
UHGV-2037575_36	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2037575_36	UniRef90	UniRef90_UPI001BA79D8F	helix-turn-helix domain-containing protein	NA
UHGV-2037575_36	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2037575_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2037575_36	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2037575_41	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2037575_41	UniRef90	UniRef90_A0A1C6HBF7	AP2 domain	NA
UHGV-2037575_41	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-2037575_41	Pfam	PF00847	AP2 domain	AP2
UHGV-2037575_41	Structural annotation	PF00847, MF_01580, NF007510	NA	NA
UHGV-2037575_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2037575_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2037575_44	UniRef90	UniRef90_A0A173U128	Transcriptional regulator, y4mF family	NA
UHGV-2037575_44	eggNOG-mapper	1232453.BAIF02000002_gene1306	helix-turn-helix	NA
UHGV-2037575_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2037575_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2037575_44	Structural annotation	PF13560, MF_02017, NF041951, COG1396	NA	NA
UHGV-2037575_48	Structural annotation	PF14844	NA	NA
UHGV-2037575_50	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-2037575_51	Structural annotation	PF11950	NA	NA
UHGV-2037575_53	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-2037575_54	PHROG	phrog_1672	NA	unknown function
UHGV-2037575_54	UniRef90	UniRef90_A0A3P6KCP8	NA	NA
UHGV-2037575_54	eggNOG-mapper	632245.CLP_2710	NA	NA
UHGV-2037575_61	eggNOG-mapper	908337.HMPREF9257_0550	NA	NA
UHGV-2037575_64	UniRef90	UniRef90_UPI001BA881F1	transposase	NA
UHGV-2037575_64	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-2037575_64	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-2037575_65	PHROG	phrog_1123	NA	unknown function
UHGV-2037575_65	UniRef90	UniRef90_A0A6N9P096	DNA gyrase	NA
UHGV-2037575_65	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-2037575_65	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-2037575_66	PHROG	phrog_16304	NA	unknown function
UHGV-2037575_66	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-2037575_66	Structural annotation	PF10771, MF_01177, TIGR01610, COG5529	NA	NA
UHGV-2037575_67	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2037575_67	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2037575_67	UniRef90	UniRef90_A0A417V5H0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2037575_67	eggNOG-mapper	1158604.I591_01786	Endodeoxyribonuclease RusA	NA
UHGV-2037575_67	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2037575_67	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2037575_67	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2037575_68	PHROG	phrog_7566	NA	unknown function
UHGV-2037575_68	UniRef90	UniRef90_A0A417V5I7	Phosphoenolpyruvate carboxykinase	NA
UHGV-2037575_68	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-2037575_69	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2037575_69	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-2037575_69	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-2037575_69	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2037575_70	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2037575_70	UniRef90	UniRef90_A0A417V5L9	Recombinase	NA
UHGV-2037575_70	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-2037575_70	Pfam	PF04404	ERF superfamily	ERF
UHGV-2037575_70	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2037575_74	PHROG	phrog_36464	NA	unknown function
UHGV-2037575_74	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-2037575_74	Structural annotation	PF09035	NA	NA
UHGV-2037575_75	AcrCatalog	cluster_17974	NA	NA
UHGV-2037575_78	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2037575_78	UniRef90	UniRef90_A0A417V5F3	XRE family transcriptional regulator	NA
UHGV-2037575_78	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2037575_78	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2037575_78	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2037575_78	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-2037575_79	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2037575_79	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2037575_79	UniRef90	UniRef90_A0A417V5F8	XRE family transcriptional regulator	NA
UHGV-2037575_79	eggNOG-mapper	610130.Closa_1361	Helix-turn-helix XRE-family like proteins	NA
UHGV-2037575_79	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-2037575_79	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2037575_79	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-2037575_80	PHROG	phrog_87	metallo-protease	other
UHGV-2037575_80	UniRef90	UniRef90_A0A417V5H7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2037575_80	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-2037575_80	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2037575_80	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2037575_80	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2037575_82	KOfam	K14059	int; integrase	NA
UHGV-2037575_82	PHROG	phrog_1	integrase	integration and excision
UHGV-2037575_82	UniRef90	UniRef90_A0A173TZS3	Integrase	NA
UHGV-2037575_82	eggNOG-mapper	1235798.C817_05483	Phage integrase family	NA
UHGV-2037575_82	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2037575_82	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2037575_82	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA