UHGV-2039137

Genome information

Genome length 30,500 bps

CDS count 52

Completeness 70.76% (medium-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-2039137
vOTU ID	vOTU-022788
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029303\|Ga0168703_1000436\|provirus_5556_36055
BioSample	SAMEA2737684
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.27
Jumbo phage	No

Genome content
Genome length	30,500 bps
GC content	56.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	88.53%
Average CDS length	524.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2039137_1	KOfam	K14059	int; integrase	NA
UHGV-2039137_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2039137_1	UniRef90	UniRef90_A0A353J242	Site-specific integrase	NA
UHGV-2039137_1	eggNOG-mapper	246199.CUS_5913	Phage integrase family	NA
UHGV-2039137_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2039137_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2039137_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2039137_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2039137_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2039137_4	UniRef90	UniRef90_UPI00189A3C4E	helix-turn-helix domain-containing protein	NA
UHGV-2039137_4	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-2039137_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2039137_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2039137_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2039137_6	Structural annotation	NF041909	NA	NA
UHGV-2039137_9	UniRef90	UniRef90_UPI0006CFEDB7	helix-turn-helix transcriptional regulator	NA
UHGV-2039137_9	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2039137_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2039137_9	Structural annotation	PF08667, MF_00535, NF010465, COG1396	NA	NA
UHGV-2039137_13	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-2039137_16	Structural annotation	PF20800	NA	NA
UHGV-2039137_19	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2039137_19	UniRef90	UniRef90_A0A3E3AEA8	ATP-binding protein	NA
UHGV-2039137_19	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-2039137_19	Pfam	PF13479	AAA domain	AAA_24
UHGV-2039137_19	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2039137_20	PHROG	phrog_18107	NA	unknown function
UHGV-2039137_20	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-2039137_20	eggNOG-mapper	1449050.JNLE01000003_gene3912	NA	NA
UHGV-2039137_20	Structural annotation	PF05037	NA	NA
UHGV-2039137_21	PHROG	phrog_16304	NA	unknown function
UHGV-2039137_21	eggNOG-mapper	33035.JPJF01000122_gene2459	NA	NA
UHGV-2039137_21	Pfam	PF19808	NA	DUF6291
UHGV-2039137_21	Structural annotation	PF19808	NA	NA
UHGV-2039137_22	PHROG	phrog_9804	NA	unknown function
UHGV-2039137_22	UniRef90	UniRef90_UPI0015C5D332	replicative helicase loader/inhibitor	NA
UHGV-2039137_22	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-2039137_22	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2039137_22	Structural annotation	PF11417	NA	NA
UHGV-2039137_23	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2039137_23	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2039137_23	UniRef90	UniRef90_A0A417H802	Bro-N domain-containing protein	NA
UHGV-2039137_23	eggNOG-mapper	1437608.BBIA_0645	BRO family, N-terminal domain	NA
UHGV-2039137_23	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2039137_23	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2039137_23	COG	COG3617	Prophage antirepressor	NA
UHGV-2039137_23	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2039137_25	UniRef90	UniRef90_UPI00054386A4	nucleotide pyrophosphohydrolase	NA
UHGV-2039137_25	eggNOG-mapper	743719.PaelaDRAFT_2380	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-2039137_25	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-2039137_25	Structural annotation	COG1694	NA	NA
UHGV-2039137_28	UniRef90	UniRef90_A0A832L5E4	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-2039137_28	eggNOG-mapper	1304885.AUEY01000070_gene1852	NA	NA
UHGV-2039137_28	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-2039137_29	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2039137_30	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2039137_30	UniRef90	UniRef90_A0A1Y4TXL4	AP2/ERF domain-containing protein	NA
UHGV-2039137_30	eggNOG-mapper	387344.LVIS_0713	NA	NA
UHGV-2039137_30	Structural annotation	PF00847	NA	NA
UHGV-2039137_32	eggNOG-mapper	1394176.AWUO01000014_gene642	NA	NA
UHGV-2039137_36	PHROG	phrog_35407	NA	unknown function
UHGV-2039137_37	PHROG	phrog_15863	NA	unknown function
UHGV-2039137_37	UniRef90	UniRef90_A0A498RA91	J domain-containing protein	NA
UHGV-2039137_37	eggNOG-mapper	1476583.DEIPH_ctg060orf0032	Heat shock protein DnaJ domain protein	NA
UHGV-2039137_37	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-2039137_41	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2039137_41	Structural annotation	PF02796, TIGR02844	NA	NA
UHGV-2039137_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2039137_42	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2039137_42	UniRef90	UniRef90_UPI0004130EC4	phage terminase large subunit	NA
UHGV-2039137_42	eggNOG-mapper	1121091.AUMP01000003_gene2581	Terminase-like family	NA
UHGV-2039137_42	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2039137_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-2039137_42	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2039137_43	PHROG	phrog_156	portal protein	head and packaging
UHGV-2039137_43	eggNOG-mapper	1203606.HMPREF1526_02749	NA	NA
UHGV-2039137_43	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2039137_45	PHROG	phrog_1357	major head protein	head and packaging
UHGV-2039137_45	UniRef90	UniRef90_A0A2S0L5P8	N4-gp56 family major capsid protein	NA
UHGV-2039137_45	eggNOG-mapper	696281.Desru_1092	NA	NA
UHGV-2039137_45	Pfam	PF13252	NA	DUF4043
UHGV-2039137_45	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2039137_45	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2039137_47	Structural annotation	PF20387	NA	NA
UHGV-2039137_48	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-2039137_48	eggNOG-mapper	1449126.JQKL01000046_gene2081	NA	NA
UHGV-2039137_48	COG	COG4722	Phage-related protein YomH	NA