UHGV-2039169

Genome information

Genome length 26,119 bps

CDS count 35

Completeness 73.00% (medium-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-2039169
vOTU ID	vOTU-029405
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029230\|Ga0168685_100592\|provirus_3_26121
BioSample	SAMEA2737666
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.36
Jumbo phage	No

Genome content
Genome length	26,119 bps
GC content	58.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	93.68%
Average CDS length	700.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2039169_2	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2039169_2	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2039169_2	UniRef90	UniRef90_A0A1S6ISJ4	Replicative DNA helicase	NA
UHGV-2039169_2	eggNOG-mapper	1121428.DESHY_30042___1	Participates in initiation and elongation during chromosome replication	NA
UHGV-2039169_2	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2039169_2	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2039169_2	COG	COG0305	Replicative DNA helicase	NA
UHGV-2039169_2	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2039169_4	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-2039169_4	UniRef90	UniRef90_A0A3E3IE27	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2039169_4	eggNOG-mapper	411483.FAEPRAA2165_01698	HicB family	NA
UHGV-2039169_4	Pfam	PF05534	HicB family	HicB
UHGV-2039169_4	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-2039169_4	Structural annotation	PF21748, PF05534, NF041264, COG4226	NA	NA
UHGV-2039169_5	PHROG	phrog_8887	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2039169_5	UniRef90	UniRef90_A0A3E3IE18	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-2039169_5	eggNOG-mapper	575593.HMPREF0491_00338	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2039169_5	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2039169_5	Structural annotation	COG1724	NA	NA
UHGV-2039169_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2039169_6	eggNOG-mapper	1123288.SOV_6c01520	sigma factor activity	NA
UHGV-2039169_6	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2039169_6	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2039169_6	Structural annotation	PF07374, MF_00674, TIGR02984, COG2739	NA	NA
UHGV-2039169_7	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2039169_7	UniRef90	UniRef90_A0A3C1WQI5	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-2039169_7	eggNOG-mapper	476272.RUMHYD_01978	periplasmic or secreted lipoprotein	NA
UHGV-2039169_7	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2039169_7	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2039169_7	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2039169_8	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2039169_8	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2039169_8	UniRef90	UniRef90_A0A3D2GY21	HicB family protein	NA
UHGV-2039169_8	eggNOG-mapper	518637.EUBIFOR_00139	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2039169_8	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2039169_8	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2039169_8	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2039169_9	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2039169_9	UniRef90	UniRef90_A0A1M5WHB2	5-methylcytosine-specific restriction enzyme A	NA
UHGV-2039169_9	eggNOG-mapper	1120945.ATUW01000001_gene1422	HNH nucleases	NA
UHGV-2039169_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2039169_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2039169_10	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2039169_10	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-2039169_10	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-2039169_10	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2039169_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2039169_11	UniRef90	UniRef90_UPI00164ABF0B	terminase large subunit	NA
UHGV-2039169_11	eggNOG-mapper	1122919.KB905559_gene1359	Terminase	NA
UHGV-2039169_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2039169_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2039169_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2039169_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2039169_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-2039169_12	UniRef90	UniRef90_A0A1V5WBB3	Phage portal protein	NA
UHGV-2039169_12	eggNOG-mapper	665956.HMPREF1032_02267	Phage portal protein, HK97 family	NA
UHGV-2039169_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2039169_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2039169_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2039169_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2039169_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2039169_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2039169_13	UniRef90	UniRef90_A0A1V5WAY6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2039169_13	eggNOG-mapper	1209989.TepiRe1_2604	Serine dehydrogenase proteinase	NA
UHGV-2039169_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2039169_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2039169_13	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2039169_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-2039169_14	UniRef90	UniRef90_A0A1V4VRT0	Phage capsid family protein	NA
UHGV-2039169_14	eggNOG-mapper	1121324.CLIT_8c00760	phage major capsid protein, HK97 family	NA
UHGV-2039169_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2039169_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2039169_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2039169_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2039169_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2039169_17	UniRef90	UniRef90_UPI00164A2E93	head-tail connector protein	NA
UHGV-2039169_17	eggNOG-mapper	1449126.JQKL01000051_gene3168	Phage gp6-like head-tail connector protein	NA
UHGV-2039169_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2039169_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2039169_17	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-2039169_18	PHROG	phrog_25	head closure Hc1	connector
UHGV-2039169_18	UniRef90	UniRef90_UPI00102FD6ED	head-tail adaptor protein	NA
UHGV-2039169_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2039169_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2039169_19	eggNOG-mapper	742738.HMPREF9460_04074	NA	NA
UHGV-2039169_21	PHROG	phrog_88	major tail protein	tail
UHGV-2039169_21	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-2039169_21	eggNOG-mapper	1235793.C809_01925	phage major tail protein, phi13 family	NA
UHGV-2039169_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2039169_21	COG	COG5492	NA	NA
UHGV-2039169_21	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2039169_22	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-2039169_24	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-2039169_24	UniRef90	UniRef90_UPI00164CD6DF	phage tail tape measure protein	NA
UHGV-2039169_24	eggNOG-mapper	1408437.JNJN01000030_gene1055	Phage-related minor tail protein	NA
UHGV-2039169_24	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2039169_24	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2039169_24	COG	COG5283	Phage-related tail protein	NA
UHGV-2039169_24	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2039169_25	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2039169_25	UniRef90	UniRef90_A0A1W1UYY4	Phage tail protein	NA
UHGV-2039169_25	eggNOG-mapper	1408422.JHYF01000021_gene970	tail component	NA
UHGV-2039169_25	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2039169_25	COG	COG4722	Phage-related protein YomH	NA
UHGV-2039169_25	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-2039169_26	PHROG	phrog_240	head protein	head and packaging
UHGV-2039169_26	UniRef90	UniRef90_A0A1B1INQ1	B-glycanase	NA
UHGV-2039169_26	eggNOG-mapper	1430331.EP10_10445	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-2039169_26	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-2039169_26	Structural annotation	PF12571	NA	NA
UHGV-2039169_28	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-2039169_28	UniRef90	UniRef90_A0A1B3WMA0	Cyclic nucleotide-binding domain-containing protein	NA
UHGV-2039169_28	eggNOG-mapper	189425.PGRAT_19210	Prophage endopeptidase tail	NA
UHGV-2039169_28	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2039169_28	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2039169_28	COG	COG4926	Phage-related protein	NA
UHGV-2039169_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2039169_29	PHROG	phrog_6427	NA	unknown function
UHGV-2039169_29	eggNOG-mapper	743719.PaelaDRAFT_5673	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2039169_29	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2039169_30	eggNOG-mapper	411471.SUBVAR_07280	Bacterial Ig-like domain 2	NA
UHGV-2039169_30	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-2039169_30	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2039169_32	PHROG	phrog_30034	NA	unknown function
UHGV-2039169_32	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-2039169_32	eggNOG-mapper	411477.PARMER_02022	NA	NA
UHGV-2039169_33	Structural annotation	PF06347, COG4991	NA	NA
UHGV-2039169_34	eggNOG-mapper	1123075.AUDP01000020_gene1531	NA	NA
UHGV-2039169_35	PHROG	phrog_297	holin	lysis
UHGV-2039169_35	UniRef90	UniRef90_A0A1W2A7S4	Holin, phage phi LC3 family	NA
UHGV-2039169_35	eggNOG-mapper	936375.HMPREF1152_0014	Bacteriophage holin	NA
UHGV-2039169_35	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2039169_35	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2039169_35	COG	COG5546	NA	NA
UHGV-2039169_35	Structural annotation	COG5546	NA	NA