UHGV-2039458

Genome information

vOTU vOTU-020263

Genome length 36,565 bps

CDS count 51

Completeness 71.27% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-2039458
vOTU ID	vOTU-020263
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029336\|Ga0243752_101078
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	71.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.42
Jumbo phage	No

Genome content
Genome length	36,565 bps
GC content	43.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.06%
Average CDS length	648.29 bps
tRNA count	8
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2039458_1	PHROG	phrog_87	metallo-protease	other
UHGV-2039458_1	UniRef90	UniRef90_A0A2V1JW48	Membrane protein	NA
UHGV-2039458_1	eggNOG-mapper	1256908.HMPREF0373_00642	Zn peptidase	NA
UHGV-2039458_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2039458_2	PHROG	phrog_11900	NA	unknown function
UHGV-2039458_2	UniRef90	UniRef90_U2Q7T4	Fic family protein	NA
UHGV-2039458_2	eggNOG-mapper	1256908.HMPREF0373_00218	Fic/DOC family	NA
UHGV-2039458_2	Pfam	PF02661	Fic/DOC family	Fic
UHGV-2039458_2	COG	COG3177	Fic family protein	NA
UHGV-2039458_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2039458_3	eggNOG-mapper	1384484.AEQU_0191	Helix-turn-helix XRE-family like proteins	NA
UHGV-2039458_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2039458_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2039458_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2039458_5	PHROG	phrog_435	endolysin	lysis
UHGV-2039458_5	UniRef90	UniRef90_UPI000D659E9B	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2039458_5	eggNOG-mapper	1256908.HMPREF0373_00462	Cell wall hydrolase autolysin	NA
UHGV-2039458_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2039458_5	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-2039458_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2039458_5	Structural annotation	PF01520, PF19127, MF_00417, TIGR02883, TIGR04035, COG0860	NA	NA
UHGV-2039458_7	PHROG	phrog_15303	NA	unknown function
UHGV-2039458_7	eggNOG-mapper	394503.Ccel_3271	NA	NA
UHGV-2039458_8	PHROG	phrog_9428	NA	unknown function
UHGV-2039458_8	UniRef90	UniRef90_A0A2N5P2E7	Serine/threonine protein kinase	NA
UHGV-2039458_8	eggNOG-mapper	411470.RUMGNA_00253	NA	NA
UHGV-2039458_10	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-2039458_11	PHROG	phrog_16164	NA	unknown function
UHGV-2039458_11	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-2039458_11	Structural annotation	PF10651, NF032891	NA	NA
UHGV-2039458_12	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-2039458_13	PHROG	phrog_14030	NA	unknown function
UHGV-2039458_13	UniRef90	UniRef90_UPI0018999D57	phage tail tip lysozyme	NA
UHGV-2039458_13	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-2039458_13	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-2039458_13	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-2039458_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2039458_13	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-2039458_14	PHROG	phrog_13289	tail protein	tail
UHGV-2039458_14	UniRef90	UniRef90_A0A1Q6KA70	Prophage_tail domain-containing protein	NA
UHGV-2039458_14	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-2039458_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2039458_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2039458_14	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-2039458_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2039458_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2039458_15	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-2039458_15	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-2039458_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-2039458_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2039458_16	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2039458_16	UniRef90	UniRef90_UPI0006C3C180	phage tail tape measure protein	NA
UHGV-2039458_16	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-2039458_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2039458_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2039458_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2039458_18	PHROG	phrog_88	major tail protein	tail
UHGV-2039458_18	UniRef90	UniRef90_UPI0006C1EB28	phage tail protein	NA
UHGV-2039458_18	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-2039458_18	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-2039458_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2039458_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2039458_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2039458_19	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-2039458_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2039458_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2039458_19	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-2039458_20	Structural annotation	PF05657	NA	NA
UHGV-2039458_21	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-2039458_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2039458_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-2039458_23	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-2039458_23	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-2039458_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2039458_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2039458_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2039458_23	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-2039458_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2039458_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2039458_24	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-2039458_24	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-2039458_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2039458_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2039458_24	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2039458_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-2039458_25	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-2039458_25	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-2039458_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2039458_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2039458_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2039458_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2039458_26	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-2039458_26	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-2039458_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2039458_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2039458_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2039458_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2039458_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2039458_27	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-2039458_27	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-2039458_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2039458_27	COG	COG5484	NA	NA
UHGV-2039458_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2039458_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2039458_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2039458_28	UniRef90	UniRef90_D4M587	HNH endonuclease	NA
UHGV-2039458_28	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-2039458_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2039458_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2039458_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2039458_29	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-2039458_29	Structural annotation	MF_00307	NA	NA
UHGV-2039458_32	UniRef90	UniRef90_R5TJQ4	Carbamoyl-phosphate synthase L chain ATP-binding protein	NA
UHGV-2039458_33	PHROG	phrog_15077	NA	unknown function
UHGV-2039458_33	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-2039458_33	eggNOG-mapper	1235792.C808_00069	NA	NA
UHGV-2039458_33	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2039458_34	PHROG	phrog_8470	NA	unknown function
UHGV-2039458_34	UniRef90	UniRef90_UPI0010204BDF	PcfJ domain-containing protein	NA
UHGV-2039458_34	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-2039458_34	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2039458_34	Structural annotation	PF14284	NA	NA
UHGV-2039458_35	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-2039458_37	Structural annotation	PF05641	NA	NA
UHGV-2039458_38	PHROG	phrog_7566	NA	unknown function
UHGV-2039458_38	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-2039458_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2039458_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2039458_39	UniRef90	UniRef90_A0A844E1P2	Single-stranded DNA-binding protein	NA
UHGV-2039458_39	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-2039458_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2039458_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2039458_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2039458_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2039458_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2039458_40	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2039458_40	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2039458_40	UniRef90	UniRef90_A0A173UM21	Ribonuclease H	NA
UHGV-2039458_40	eggNOG-mapper	1235790.C805_03782	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2039458_40	Pfam	PF00075	RNase H	RNase_H
UHGV-2039458_40	COG	COG0328	Ribonuclease HI	NA
UHGV-2039458_40	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2039458_41	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2039458_41	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-2039458_41	Structural annotation	PF01446	NA	NA
UHGV-2039458_43	Structural annotation	PF16311, NF002796	NA	NA
UHGV-2039458_45	PHROG	phrog_36464	NA	unknown function
UHGV-2039458_45	UniRef90	UniRef90_R6QN85	50S ribosomal protein L11 domain protein	NA
UHGV-2039458_45	eggNOG-mapper	1095750.HMPREF9970_1014	NA	NA
UHGV-2039458_45	Structural annotation	PF09035	NA	NA
UHGV-2039458_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2039458_46	UniRef90	UniRef90_UPI001E32C9FE	helix-turn-helix domain-containing protein	NA
UHGV-2039458_46	eggNOG-mapper	1536772.R70723_06540	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2039458_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2039458_46	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-2039458_47	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2039458_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2039458_47	UniRef90	UniRef90_R5G6Y4	DNA-binding helix-turn-helix protein	NA
UHGV-2039458_47	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-2039458_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2039458_47	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2039458_47	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2039458_48	PHROG	phrog_87	metallo-protease	other
UHGV-2039458_48	UniRef90	UniRef90_R6NRS1	Peptidase_M78 domain-containing protein	NA
UHGV-2039458_48	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-2039458_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2039458_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2039458_48	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2039458_49	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-2039458_49	PHROG	phrog_7872	NA	unknown function
UHGV-2039458_49	UniRef90	UniRef90_D4M567	Ion channel	NA
UHGV-2039458_49	eggNOG-mapper	411459.RUMOBE_00964	Ion channel	NA
UHGV-2039458_49	Pfam	PF07885	Ion channel	Ion_trans_2
UHGV-2039458_49	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-2039458_49	Structural annotation	PF07885, NF040645	NA	NA
UHGV-2039458_50	KOfam	K14059	int; integrase	NA
UHGV-2039458_50	PHROG	phrog_1	integrase	integration and excision
UHGV-2039458_50	UniRef90	UniRef90_A0A8E3MYE1	Site-specific integrase	NA
UHGV-2039458_50	eggNOG-mapper	1232453.BAIF02000027_gene4194	Phage integrase family	NA
UHGV-2039458_50	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2039458_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2039458_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2039458_50	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2039458_51	eggNOG-mapper	411470.RUMGNA_02992	NA	NA