UHGV-2040277

Genome information

Genome length 38,027 bps

CDS count 65

Completeness 99.99% (high-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-2040277
vOTU ID	vOTU-067399
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029346\|Ga0243823_100797\|provirus_2_38028
BioSample	SAMN05971530
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.99% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.39
Jumbo phage	No

Genome content
Genome length	38,027 bps
GC content	45.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	85.34%
Average CDS length	503.54 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2040277_2	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-2040277_2	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-2040277_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2040277_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2040277_4	UniRef90	UniRef90_A0A1C6GUM5	Predicted transcriptional regulator	NA
UHGV-2040277_4	eggNOG-mapper	665956.HMPREF1032_00148	NA	NA
UHGV-2040277_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2040277_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2040277_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2040277_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2040277_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2040277_11	UniRef90	UniRef90_A0A372WZL5	XRE family transcriptional regulator	NA
UHGV-2040277_11	eggNOG-mapper	1029718.SFBM_0096	sequence-specific DNA binding	NA
UHGV-2040277_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2040277_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2040277_11	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2040277_12	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2040277_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2040277_12	UniRef90	UniRef90_A0A372WXU8	XRE family transcriptional regulator	NA
UHGV-2040277_12	eggNOG-mapper	768486.EHR_02755	Helix-turn-helix XRE-family like proteins	NA
UHGV-2040277_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2040277_12	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2040277_12	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2040277_17	PHROG	phrog_14970	NA	unknown function
UHGV-2040277_17	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-2040277_17	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-2040277_17	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-2040277_17	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-2040277_18	PHROG	phrog_1389	NA	unknown function
UHGV-2040277_18	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-2040277_18	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-2040277_19	PHROG	phrog_7566	NA	unknown function
UHGV-2040277_19	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-2040277_19	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-2040277_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2040277_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2040277_20	UniRef90	UniRef90_A7VPP2	Single-stranded DNA-binding protein	NA
UHGV-2040277_20	eggNOG-mapper	428125.CLOLEP_00518	Single-stranded DNA-binding protein	NA
UHGV-2040277_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2040277_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2040277_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2040277_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2040277_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2040277_22	PHROG	phrog_16304	NA	unknown function
UHGV-2040277_22	UniRef90	UniRef90_A0A1C6HII5	NA	NA
UHGV-2040277_22	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-2040277_22	Pfam	PF19808	NA	DUF6291
UHGV-2040277_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2040277_23	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2040277_23	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2040277_23	UniRef90	UniRef90_A0A1C6HFV4	DNA replication protein	NA
UHGV-2040277_23	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-2040277_23	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2040277_23	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2040277_23	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-2040277_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2040277_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2040277_24	UniRef90	UniRef90_A0A1C6HG31	Holliday junction resolvase	NA
UHGV-2040277_24	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-2040277_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2040277_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2040277_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2040277_27	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-2040277_27	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-2040277_27	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-2040277_28	PHROG	phrog_22543	NA	unknown function
UHGV-2040277_30	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-2040277_30	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-2040277_31	PHROG	phrog_924	NA	unknown function
UHGV-2040277_31	UniRef90	UniRef90_A0A412AV74	NA	NA
UHGV-2040277_31	eggNOG-mapper	1316932.MHH_c17560	NA	NA
UHGV-2040277_31	Pfam	PF04448	NA	DUF551
UHGV-2040277_35	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-2040277_39	UniRef90	UniRef90_A0A7C6Y3R2	Helix-turn-helix domain-containing protein	NA
UHGV-2040277_39	Structural annotation	PF20075, TIGR03070	NA	NA
UHGV-2040277_40	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-2040277_40	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-2040277_40	UniRef90	UniRef90_UPI00164CEC80	recombinase family protein	NA
UHGV-2040277_40	eggNOG-mapper	1408423.JHYA01000001_gene988	Resolvase, N terminal domain	NA
UHGV-2040277_40	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2040277_40	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-2040277_40	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2040277_40	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-2040277_41	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2040277_41	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-2040277_41	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-2040277_41	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-2040277_41	COG	COG5410	NA	NA
UHGV-2040277_41	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2040277_43	PHROG	phrog_64	portal protein	head and packaging
UHGV-2040277_43	UniRef90	UniRef90_A0A3D3Y472	Phage portal protein	NA
UHGV-2040277_43	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2040277_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2040277_43	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2040277_45	PHROG	phrog_422	major head protein	head and packaging
UHGV-2040277_45	eggNOG-mapper	645991.Sgly_0340	NA	NA
UHGV-2040277_45	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2040277_47	UniRef90	UniRef90_UPI001D07B1DB	phage head-tail connector protein	NA
UHGV-2040277_47	eggNOG-mapper	936580.HMPREF1516_0716	NA	NA
UHGV-2040277_47	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2040277_47	Structural annotation	TIGR01560	NA	NA
UHGV-2040277_48	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-2040277_49	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-2040277_50	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-2040277_51	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-2040277_51	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2040277_52	UniRef90	UniRef90_A0A843HLA7	NA	NA
UHGV-2040277_52	Pfam	PF16478	NA	DUF5055
UHGV-2040277_52	Structural annotation	PF16478	NA	NA
UHGV-2040277_53	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-2040277_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2040277_54	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-2040277_54	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2040277_55	PHROG	phrog_13879	NA	unknown function
UHGV-2040277_55	eggNOG-mapper	1304866.K413DRAFT_0774	NA	NA
UHGV-2040277_55	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-2040277_56	PHROG	phrog_18725	NA	unknown function
UHGV-2040277_56	eggNOG-mapper	665956.HMPREF1032_02705	NA	NA
UHGV-2040277_57	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-2040277_58	UniRef90	UniRef90_R6NDD3	Glycosyl hydrolase family 25	NA
UHGV-2040277_58	Structural annotation	PF02796, COG2771	NA	NA
UHGV-2040277_59	KOfam	K07273	acm; lysozyme	NA
UHGV-2040277_59	PHROG	phrog_291	endolysin	lysis
UHGV-2040277_59	UniRef90	UniRef90_A0A1C5NS63	Autolytic lysozyme	NA
UHGV-2040277_59	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-2040277_59	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2040277_59	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2040277_59	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-2040277_60	PHROG	phrog_1863	NA	unknown function
UHGV-2040277_60	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-2040277_60	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-2040277_61	PHROG	phrog_297	holin	lysis
UHGV-2040277_61	UniRef90	UniRef90_A7VT88	Holin, phage phi LC3 family	NA
UHGV-2040277_61	eggNOG-mapper	428125.CLOLEP_00169	COG COG5546 Small integral membrane protein	NA
UHGV-2040277_61	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2040277_61	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2040277_61	COG	COG5546	NA	NA
UHGV-2040277_61	Structural annotation	COG5546	NA	NA
UHGV-2040277_63	eggNOG-mapper	428125.CLOLEP_01917	NA	NA
UHGV-2040277_64	KOfam	K03657	uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]	NA
UHGV-2040277_64	PHROG	phrog_1967	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2040277_64	UniRef90	UniRef90_A0A1C5YIE6	DNA helicase	NA
UHGV-2040277_64	eggNOG-mapper	428125.CLOLEP_01918	ATP-dependent DNA helicase	NA
UHGV-2040277_64	PADLOC	drt-cluster22	DRT	DRT
UHGV-2040277_64	Pfam	PF00580	UvrD/REP helicase N-terminal domain	UvrD-helicase
UHGV-2040277_64	Pfam	PF13361	UvrD-like helicase C-terminal domain	UvrD_C
UHGV-2040277_64	Pfam	PF21196	PcrA/UvrD tudor domain	PcrA_UvrD_tudor
UHGV-2040277_64	COG	COG0210	Superfamily I DNA or RNA helicase	NA
UHGV-2040277_64	Structural annotation	PF00580, PF13361, PF12073, MF_01920, NF008743, COG0210	NA	NA
UHGV-2040277_65	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2040277_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2040277_65	UniRef90	UniRef90_A7VTM9	DNA-binding helix-turn-helix protein	NA
UHGV-2040277_65	eggNOG-mapper	428125.CLOLEP_01922	Helix-turn-helix XRE-family like proteins	NA
UHGV-2040277_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2040277_65	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA