UHGV-2040318

Genome information

Genome length 32,480 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9663

Prediction confidence Confident

Genome information
Genome ID	UHGV-2040318
vOTU ID	vOTU-009398
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029240\|Ga0168677_100206\|provirus_15494_47973
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9663
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.82
Jumbo phage	No

Genome content
Genome length	32,480 bps
GC content	41.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.80%
Average CDS length	561.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2040318_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2040318_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2040318_1	UniRef90	UniRef90_A0A358LGC1	Recombinase domain-containing protein	NA
UHGV-2040318_1	eggNOG-mapper	1410624.JNKK01000009_gene2119	Recombinase	NA
UHGV-2040318_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2040318_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2040318_2	KOfam	K14059	int; integrase	NA
UHGV-2040318_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2040318_2	UniRef90	UniRef90_UPI0005D1DBC9	site-specific integrase	NA
UHGV-2040318_2	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-2040318_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2040318_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2040318_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2040318_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2040318_3	PHROG	phrog_1914	NA	unknown function
UHGV-2040318_3	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-2040318_3	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2040318_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2040318_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2040318_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2040318_4	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-2040318_4	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2040318_4	UniRef90	UniRef90_UPI001D071234	type I restriction endonuclease	NA
UHGV-2040318_4	eggNOG-mapper	742738.HMPREF9460_04035	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-2040318_4	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-2040318_4	COG	COG4748	NA	NA
UHGV-2040318_4	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-2040318_5	eggNOG-mapper	1410665.JNKR01000003_gene1876	NA	NA
UHGV-2040318_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2040318_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2040318_6	UniRef90	UniRef90_A0A4S2A889	XRE family transcriptional regulator	NA
UHGV-2040318_6	eggNOG-mapper	1226322.HMPREF1545_02463	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2040318_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2040318_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2040318_6	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-2040318_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2040318_9	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2040318_9	UniRef90	UniRef90_A0A354M9D6	Transcriptional regulator	NA
UHGV-2040318_9	eggNOG-mapper	1211035.CD30_04630	Peptidase S24-like	NA
UHGV-2040318_9	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2040318_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2040318_9	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2040318_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2040318_12	Structural annotation	PF01376	NA	NA
UHGV-2040318_14	PHROG	phrog_38338	NA	unknown function
UHGV-2040318_14	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-2040318_15	PHROG	phrog_4433	NA	unknown function
UHGV-2040318_15	eggNOG-mapper	445972.ANACOL_00982	regulation of DNA-templated transcription, elongation	NA
UHGV-2040318_15	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2040318_15	Structural annotation	PF12120, NF000318	NA	NA
UHGV-2040318_16	PHROG	phrog_8470	NA	unknown function
UHGV-2040318_16	UniRef90	UniRef90_UPI000E4BB21C	PcfJ domain-containing protein	NA
UHGV-2040318_16	eggNOG-mapper	665956.HMPREF1032_03096	PcfJ-like protein	NA
UHGV-2040318_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2040318_16	Structural annotation	PF14284	NA	NA
UHGV-2040318_17	PHROG	phrog_15609	NA	unknown function
UHGV-2040318_17	UniRef90	UniRef90_A0A3A6JZQ1	NA	NA
UHGV-2040318_17	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-2040318_17	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2040318_19	Structural annotation	PF09871, COG4014	NA	NA
UHGV-2040318_20	UniRef90	UniRef90_UPI0012AC12CD	Lar family restriction alleviation protein	NA
UHGV-2040318_20	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2040318_20	Structural annotation	PF14354	NA	NA
UHGV-2040318_21	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-2040318_23	PHROG	phrog_824	NA	unknown function
UHGV-2040318_23	UniRef90	UniRef90_R9J0I1	VRR-NUC domain-containing protein	NA
UHGV-2040318_23	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-2040318_23	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2040318_23	Structural annotation	PF08774	NA	NA
UHGV-2040318_24	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-2040318_24	UniRef90	UniRef90_R5Y974	PF12961 structural domain protein	NA
UHGV-2040318_24	eggNOG-mapper	1121124.JNIX01000011_gene1703	NA	NA
UHGV-2040318_24	Pfam	PF12961	NA	DUF3850
UHGV-2040318_24	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-2040318_25	PHROG	phrog_24368	NA	unknown function
UHGV-2040318_26	Structural annotation	PF07073, COG4568	NA	NA
UHGV-2040318_27	eggNOG-mapper	1121115.AXVN01000026_gene1001	COG NOG34358 non supervised orthologous group	NA
UHGV-2040318_27	Pfam	PF19481	NA	DUF6017
UHGV-2040318_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2040318_28	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-2040318_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2040318_30	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-2040318_30	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-2040318_30	Structural annotation	PF04545	NA	NA
UHGV-2040318_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2040318_31	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-2040318_31	eggNOG-mapper	573061.Clocel_2442	HNH endonuclease	NA
UHGV-2040318_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2040318_32	PHROG	phrog_1066	NA	unknown function
UHGV-2040318_32	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-2040318_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2040318_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2040318_33	UniRef90	UniRef90_UPI001956B339	terminase large subunit	NA
UHGV-2040318_33	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-2040318_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2040318_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2040318_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2040318_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2040318_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-2040318_34	UniRef90	UniRef90_T0HUG3	Portal protein, phage associated	NA
UHGV-2040318_34	eggNOG-mapper	411465.PEPMIC_00733	Phage portal protein	NA
UHGV-2040318_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2040318_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2040318_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2040318_35	KOfam	K06904	NA	NA
UHGV-2040318_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2040318_35	UniRef90	UniRef90_UPI001C8D27A1	HK97 family phage prohead protease	NA
UHGV-2040318_35	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-2040318_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2040318_35	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2040318_35	COG	COG3740	Phage head maturation protease	NA
UHGV-2040318_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2040318_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-2040318_36	UniRef90	UniRef90_A0A417VTC4	Phage major capsid protein	NA
UHGV-2040318_36	eggNOG-mapper	1297617.JPJD01000020_gene308	Phage capsid family	NA
UHGV-2040318_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2040318_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2040318_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2040318_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2040318_37	PHROG	phrog_5223	neck protein	connector
UHGV-2040318_37	UniRef90	UniRef90_UPI00195CAB81	head-tail connector protein	NA
UHGV-2040318_37	eggNOG-mapper	411465.PEPMIC_00737	NA	NA
UHGV-2040318_37	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2040318_37	Structural annotation	TIGR01560	NA	NA
UHGV-2040318_38	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2040318_38	UniRef90	UniRef90_A0A1G5XN47	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-2040318_38	eggNOG-mapper	588581.Cpap_1270	NA	NA
UHGV-2040318_38	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2040318_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2040318_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2040318_39	UniRef90	UniRef90_UPI00105617E0	HK97 gp10 family phage protein	NA
UHGV-2040318_39	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-2040318_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2040318_40	eggNOG-mapper	476272.RUMHYD_01476	COG NOG18352 non supervised orthologous group	NA
UHGV-2040318_41	PHROG	phrog_88	major tail protein	tail
UHGV-2040318_41	UniRef90	UniRef90_UPI0018A94F49	phage tail protein	NA
UHGV-2040318_41	eggNOG-mapper	1158604.I591_01761	phage major tail protein, phi13 family	NA
UHGV-2040318_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2040318_41	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2040318_42	PHROG	phrog_709	NA	unknown function
UHGV-2040318_42	eggNOG-mapper	1120978.KB894081_gene116	NA	NA
UHGV-2040318_42	Structural annotation	PF11836	NA	NA
UHGV-2040318_44	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2040318_44	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2040318_44	Structural annotation	PF07374, MF_00674, TIGR02984, COG1595	NA	NA
UHGV-2040318_45	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-2040318_45	eggNOG-mapper	742738.HMPREF9460_04078	domain protein	NA
UHGV-2040318_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2040318_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2040318_46	UniRef90	UniRef90_A0A7C6HU97	Phage tail family protein	NA
UHGV-2040318_46	eggNOG-mapper	665950.HMPREF1025_02661	Phage tail protein	NA
UHGV-2040318_46	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2040318_46	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2040318_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-2040318_46	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-2040318_47	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2040318_47	eggNOG-mapper	1120972.AUMH01000039_gene670	Prophage endopeptidase tail	NA
UHGV-2040318_47	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-2040318_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2040318_47	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2040318_47	COG	COG4926	Phage-related protein	NA
UHGV-2040318_48	PHROG	phrog_24267	NA	unknown function
UHGV-2040318_48	UniRef90	UniRef90_A0A6C0IUI7	Collar domain-containing protein	NA
UHGV-2040318_48	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-2040318_48	COG	COG4675	Phage tail collar domain	NA
UHGV-2040318_49	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-2040318_50	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-2040318_50	PHROG	phrog_25979	NA	unknown function
UHGV-2040318_50	eggNOG-mapper	1120998.AUFC01000030_gene2248	NA	NA
UHGV-2040318_50	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2040318_52	PHROG	phrog_1863	NA	unknown function
UHGV-2040318_52	eggNOG-mapper	552398.HMPREF0866_01158	NA	NA
UHGV-2040318_53	KOfam	K07273	acm; lysozyme	NA
UHGV-2040318_53	PHROG	phrog_291	endolysin	lysis
UHGV-2040318_53	UniRef90	UniRef90_A0A354MB03	PG_binding_1 domain-containing protein	NA
UHGV-2040318_53	eggNOG-mapper	1232446.BAIE02000015_gene1290	Glycosyl hydrolase, family 25	NA
UHGV-2040318_53	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2040318_53	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2040318_53	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2040318_53	Structural annotation	PF01183, PF01476, PF08230, TIGR02899, COG3757	NA	NA
UHGV-2040318_54	PHROG	phrog_443	holin	lysis
UHGV-2040318_54	UniRef90	UniRef90_UPI0009883463	holin	NA
UHGV-2040318_54	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-2040318_54	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2040318_54	Structural annotation	PF16945	NA	NA