UHGV-2040931

Genome information

Genome length 33,598 bps

CDS count 39

Completeness 95.49% (high-quality)

geNomad score 0.9607

Prediction confidence Confident

Genome information
Genome ID	UHGV-2040931
vOTU ID	vOTU-008624
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029355\|Ga0243784_100414\|provirus_19621_66570
BioSample	SAMN05971490
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9607
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.82
Jumbo phage	No

Genome content
Genome length	33,598 bps
GC content	39.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	88.95%
Average CDS length	768.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2040931_1	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2040931_1	UniRef90	UniRef90_A0A3D0XVN5	Capsid protein (Fragment)	NA
UHGV-2040931_1	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-2040931_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2040931_1	COG	COG2369	NA	NA
UHGV-2040931_2	KOfam	K09384	NA	NA
UHGV-2040931_2	UniRef90	UniRef90_A0A412DTL3	NA	NA
UHGV-2040931_2	eggNOG-mapper	386415.NT01CX_2411	NA	NA
UHGV-2040931_2	Pfam	PF09848	Schlafen group 3, DNA/RNA helicase domain	SLFN-g3_helicase
UHGV-2040931_2	COG	COG3410	NA	NA
UHGV-2040931_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2040931_3	PHROG	phrog_20388	endolysin	lysis
UHGV-2040931_3	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2040931_3	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2040931_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2040931_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2040931_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2040931_3	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-2040931_4	PHROG	phrog_774	NA	unknown function
UHGV-2040931_4	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2040931_5	PHROG	phrog_443	holin	lysis
UHGV-2040931_5	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-2040931_5	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-2040931_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2040931_5	Structural annotation	PF16945	NA	NA
UHGV-2040931_6	PHROG	phrog_4105	NA	unknown function
UHGV-2040931_6	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-2040931_7	eggNOG-mapper	1122931.AUAE01000019_gene984	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-2040931_7	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2040931_8	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2040931_8	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-2040931_8	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2040931_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2040931_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2040931_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2040931_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2040931_9	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-2040931_9	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-2040931_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-2040931_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2040931_10	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-2040931_10	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2040931_10	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-2040931_10	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-2040931_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2040931_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2040931_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2040931_11	Structural annotation	PF11836	NA	NA
UHGV-2040931_12	PHROG	phrog_88	major tail protein	tail
UHGV-2040931_12	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-2040931_12	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-2040931_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2040931_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2040931_13	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-2040931_13	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2040931_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2040931_13	Structural annotation	TIGR01725	NA	NA
UHGV-2040931_14	eggNOG-mapper	272623.L59277	NA	NA
UHGV-2040931_14	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-2040931_15	PHROG	phrog_19734	NA	unknown function
UHGV-2040931_15	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-2040931_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2040931_16	PHROG	phrog_749	NA	unknown function
UHGV-2040931_16	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-2040931_16	eggNOG-mapper	1450694.BTS2_0540	NA	NA
UHGV-2040931_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-2040931_17	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-2040931_17	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-2040931_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2040931_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2040931_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2040931_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2040931_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2040931_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2040931_18	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2040931_18	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-2040931_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2040931_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2040931_18	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2040931_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-2040931_19	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-2040931_19	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-2040931_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2040931_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2040931_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2040931_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2040931_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2040931_20	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-2040931_20	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-2040931_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2040931_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2040931_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2040931_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2040931_21	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2040931_21	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-2040931_21	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-2040931_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2040931_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2040931_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2040931_22	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-2040931_22	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-2040931_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2040931_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2040931_23	PHROG	phrog_31049	NA	unknown function
UHGV-2040931_23	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-2040931_23	Structural annotation	TIGR01636	NA	NA
UHGV-2040931_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2040931_24	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-2040931_24	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2040931_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2040931_26	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2040931_26	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-2040931_26	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-2040931_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2040931_26	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2040931_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2040931_26	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2040931_28	Structural annotation	COG1862	NA	NA
UHGV-2040931_29	PHROG	phrog_6058	NA	unknown function
UHGV-2040931_29	Structural annotation	NF033787	NA	NA
UHGV-2040931_30	UniRef90	UniRef90_UPI0015F48AC0	Lar family restriction alleviation protein	NA
UHGV-2040931_31	Structural annotation	PF15597	NA	NA
UHGV-2040931_32	KOfam	K19170	dndC; DNA sulfur modification protein DndC	NA
UHGV-2040931_32	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2040931_32	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2040931_32	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2040931_32	PADLOC	BrxP_00001	BrxP	BREX
UHGV-2040931_32	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2040931_32	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2040931_33	PHROG	phrog_585	NA	unknown function
UHGV-2040931_33	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-2040931_33	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-2040931_33	Pfam	PF10711	NA	DUF2513
UHGV-2040931_33	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-2040931_35	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-2040931_35	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-2040931_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2040931_35	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-2040931_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2040931_36	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-2040931_36	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-2040931_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2040931_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2040931_36	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-2040931_37	PHROG	phrog_1914	NA	unknown function
UHGV-2040931_37	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2040931_37	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2040931_37	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2040931_37	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2040931_37	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2040931_38	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-2040931_38	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2040931_38	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-2040931_39	KOfam	K14059	int; integrase	NA
UHGV-2040931_39	PHROG	phrog_1	integrase	integration and excision
UHGV-2040931_39	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-2040931_39	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-2040931_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2040931_39	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2040931_39	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA