UHGV-2041761

Genome information

Genome length 22,326 bps

CDS count 38

Completeness 59.91% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-2041761
vOTU ID	vOTU-022940
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029248\|Ga0168696_1000945
BioSample	SAMEA2737677
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.25
Jumbo phage	No

Genome content
Genome length	22,326 bps
GC content	43.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	93.71%
Average CDS length	554.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2041761_3	PHROG	phrog_1097	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2041761_3	UniRef90	UniRef90_A0A368VXH3	Rad52/22 family double-strand break repair protein	NA
UHGV-2041761_3	eggNOG-mapper	518766.Rmar_2527	double-strand break repair protein	NA
UHGV-2041761_3	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-2041761_3	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-2041761_3	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-2041761_4	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2041761_4	UniRef90	UniRef90_A0A1Y3RPZ6	NA	NA
UHGV-2041761_4	eggNOG-mapper	1158602.I590_00670	NA	NA
UHGV-2041761_4	Pfam	PF12684	NA	DUF3799
UHGV-2041761_4	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2041761_5	Structural annotation	PF19561	NA	NA
UHGV-2041761_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2041761_6	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-2041761_6	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2041761_6	Structural annotation	PF05772	NA	NA
UHGV-2041761_7	PHROG	phrog_7566	NA	unknown function
UHGV-2041761_7	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-2041761_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2041761_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2041761_9	UniRef90	UniRef90_A0A3C1A6Q0	Single-stranded DNA-binding protein	NA
UHGV-2041761_9	eggNOG-mapper	1291050.JAGE01000001_gene1719	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2041761_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2041761_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2041761_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2041761_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2041761_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2041761_10	PHROG	phrog_15768	NA	unknown function
UHGV-2041761_10	UniRef90	UniRef90_UPI000787D4F0	NA	NA
UHGV-2041761_10	eggNOG-mapper	397288.C806_03002	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-2041761_10	Pfam	PF19808	NA	DUF6291
UHGV-2041761_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2041761_10	Structural annotation	PF19808	NA	NA
UHGV-2041761_11	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2041761_11	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2041761_11	UniRef90	UniRef90_A0A845LQB7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2041761_11	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2041761_11	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2041761_11	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2041761_12	PHROG	phrog_757	DNA methyltransferase	other
UHGV-2041761_12	UniRef90	UniRef90_UPI00137A1EA0	DNA cytosine methyltransferase	NA
UHGV-2041761_12	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2041761_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2041761_12	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-2041761_15	PHROG	phrog_4292	NA	unknown function
UHGV-2041761_15	eggNOG-mapper	485916.Dtox_4212	NA	NA
UHGV-2041761_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2041761_17	UniRef90	UniRef90_UPI0018971728	HNH endonuclease	NA
UHGV-2041761_17	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-2041761_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2041761_18	PHROG	phrog_1066	NA	unknown function
UHGV-2041761_18	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-2041761_18	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2041761_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2041761_19	UniRef90	UniRef90_A0A174HN48	Phage terminase-like protein, large subunit	NA
UHGV-2041761_19	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-2041761_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2041761_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2041761_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2041761_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2041761_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-2041761_20	UniRef90	UniRef90_A0A355S0M3	Phage portal protein	NA
UHGV-2041761_20	eggNOG-mapper	1382358.JHVN01000024_gene1705	Phage portal protein	NA
UHGV-2041761_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2041761_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2041761_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2041761_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2041761_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2041761_21	UniRef90	UniRef90_A0A355BJ21	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2041761_21	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-2041761_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2041761_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2041761_21	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-2041761_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-2041761_22	UniRef90	UniRef90_A0A355RXP5	Phage major capsid protein	NA
UHGV-2041761_22	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-2041761_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2041761_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2041761_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2041761_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2041761_23	PHROG	phrog_5223	neck protein	connector
UHGV-2041761_23	UniRef90	UniRef90_UPI0003FE9443	head-tail connector protein	NA
UHGV-2041761_23	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-2041761_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2041761_23	Structural annotation	TIGR01560	NA	NA
UHGV-2041761_24	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2041761_24	UniRef90	UniRef90_A0A7X9GK78	Phage head closure protein	NA
UHGV-2041761_24	eggNOG-mapper	887929.HMP0721_1263	NA	NA
UHGV-2041761_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2041761_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2041761_25	UniRef90	UniRef90_UPI001627B74B	HK97 gp10 family phage protein	NA
UHGV-2041761_25	eggNOG-mapper	1121105.ATXL01000027_gene749	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2041761_25	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2041761_26	PHROG	phrog_78	tail terminator	connector
UHGV-2041761_26	eggNOG-mapper	588581.Cpap_1268	NA	NA
UHGV-2041761_26	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-2041761_27	PHROG	phrog_88	major tail protein	tail
UHGV-2041761_27	UniRef90	UniRef90_A0A7C6KQQ3	Phage tail protein	NA
UHGV-2041761_27	eggNOG-mapper	365048.Q0H233_9CAUD	NA	NA
UHGV-2041761_27	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-2041761_27	Pfam	PF03442	Carbohydrate binding domain X2	CBM_X2
UHGV-2041761_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2041761_27	Structural annotation	PF04630, PF12733, TIGR01603, COG3498	NA	NA
UHGV-2041761_28	PHROG	phrog_709	NA	unknown function
UHGV-2041761_28	eggNOG-mapper	904144.AEJD01000006_gene567	NA	NA
UHGV-2041761_29	PHROG	phrog_3033	NA	unknown function
UHGV-2041761_29	eggNOG-mapper	476272.RUMHYD_01479	NA	NA
UHGV-2041761_30	PHROG	phrog_20920	NA	unknown function
UHGV-2041761_30	eggNOG-mapper	293826.Amet_2614	NA	NA
UHGV-2041761_30	Structural annotation	PF16674	NA	NA
UHGV-2041761_31	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2041761_31	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2041761_31	UniRef90	UniRef90_A0A265Q7Y6	Toxin HicA	NA
UHGV-2041761_31	eggNOG-mapper	641112.ACOK01000116_gene2618	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2041761_31	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2041761_31	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2041761_31	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2041761_32	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2041761_32	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2041761_32	UniRef90	UniRef90_A0A265Q7F0	HicB family protein	NA
UHGV-2041761_32	eggNOG-mapper	138119.DSY3841	PFAM Uncharacterised protein family UPF0150	NA
UHGV-2041761_32	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2041761_32	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2041761_32	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2041761_33	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2041761_33	eggNOG-mapper	755731.Clo1100_0555	tail tape measure protein	NA
UHGV-2041761_33	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2041761_33	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2041761_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2041761_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-2041761_35	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2041761_36	PHROG	phrog_538	minor tail protein	tail
UHGV-2041761_36	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2041761_36	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA