UHGV-2042317

Genome information

Genome length 40,411 bps

CDS count 51

Completeness 96.55% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-2042317
vOTU ID	vOTU-063360
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029248\|Ga0168696_1000140\|provirus_21331_61741
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.55% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.9
Jumbo phage	No

Genome content
Genome length	40,411 bps
GC content	34.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.27%
Average CDS length	718.77 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2042317_1	KOfam	K11069	potD; spermidine/putrescine transport system substrate-binding protein	NA
UHGV-2042317_1	UniRef90	UniRef90_R6RVE2	Spermidine/putrescine-binding periplasmic protein	NA
UHGV-2042317_1	eggNOG-mapper	1280668.ATVT01000012_gene3203	Bacterial extracellular solute-binding protein	NA
UHGV-2042317_1	Pfam	PF13416	Bacterial extracellular solute-binding protein	SBP_bac_8
UHGV-2042317_1	COG	COG0687	Spermidine/putrescine-binding periplasmic protein	NA
UHGV-2042317_2	KOfam	K14059	int; integrase	NA
UHGV-2042317_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2042317_2	UniRef90	UniRef90_UPI001B3C717A	site-specific integrase	NA
UHGV-2042317_2	eggNOG-mapper	861454.HMPREF9099_00328	Phage integrase family	NA
UHGV-2042317_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2042317_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2042317_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2042317_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2042317_3	UniRef90	UniRef90_A0A348ZC97	UDP-N-acetylglucosamine kinase	NA
UHGV-2042317_3	eggNOG-mapper	246199.CUS_4649	zeta toxin	NA
UHGV-2042317_3	Pfam	PF06414	Zeta toxin	Zeta_toxin
UHGV-2042317_3	COG	COG4185	Predicted ABC-type ATPase or kinase	NA
UHGV-2042317_3	Structural annotation	PF06414, MF_00234, NF041574, COG4185	NA	NA
UHGV-2042317_4	PHROG	phrog_87	metallo-protease	other
UHGV-2042317_4	UniRef90	UniRef90_A7VVX5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2042317_4	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-2042317_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2042317_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2042317_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2042317_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2042317_5	UniRef90	UniRef90_A0A316PB02	HTH cro/C1-type domain-containing protein	NA
UHGV-2042317_5	eggNOG-mapper	246199.CUS_5582	sequence-specific DNA binding	NA
UHGV-2042317_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2042317_5	COG	COG1426	NA	NA
UHGV-2042317_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2042317_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2042317_6	UniRef90	UniRef90_R6CEZ8	DNA-binding helix-turn-helix protein	NA
UHGV-2042317_6	eggNOG-mapper	1499683.CCFF01000016_gene927	Helix-turn-helix XRE-family like proteins	NA
UHGV-2042317_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2042317_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2042317_6	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2042317_7	PHROG	phrog_750	NA	unknown function
UHGV-2042317_7	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-2042317_7	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2042317_9	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-2042317_10	UniRef90	UniRef90_UPI001B3C932B	helix-turn-helix domain-containing protein	NA
UHGV-2042317_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2042317_10	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-2042317_13	PHROG	phrog_3709	NA	unknown function
UHGV-2042317_14	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2042317_14	UniRef90	UniRef90_A0A348Z940	NA	NA
UHGV-2042317_14	eggNOG-mapper	1274524.BSONL12_06023	NA	NA
UHGV-2042317_14	Pfam	PF10926	NA	DUF2800
UHGV-2042317_14	COG	COG2887	RecB family exonuclease	NA
UHGV-2042317_14	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2042317_15	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2042317_15	UniRef90	UniRef90_A0A348Z939	NA	NA
UHGV-2042317_15	eggNOG-mapper	1540257.JQMW01000004_gene440	NA	NA
UHGV-2042317_15	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2042317_15	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2042317_16	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2042317_16	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2042317_16	UniRef90	UniRef90_A0A348Z938	POLAc domain-containing protein	NA
UHGV-2042317_16	eggNOG-mapper	1121342.AUCO01000004_gene620	DNA polymerase	NA
UHGV-2042317_16	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2042317_16	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2042317_16	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2042317_17	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2042317_17	UniRef90	UniRef90_A0A1C5PGM9	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2042317_17	eggNOG-mapper	332101.JIBU02000048_gene3721	virulence-associated E family protein	NA
UHGV-2042317_17	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2042317_17	Structural annotation	PF03090, NF040562	NA	NA
UHGV-2042317_18	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2042317_18	UniRef90	UniRef90_UPI000FF86DAB	virulence-associated E family protein	NA
UHGV-2042317_18	eggNOG-mapper	1274524.BSONL12_06063	Virulence-associated protein E	NA
UHGV-2042317_18	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2042317_18	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2042317_18	Structural annotation	PF05272, NF011296, COG5545	NA	NA
UHGV-2042317_20	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2042317_20	UniRef90	UniRef90_A0A348Z936	Nuclease	NA
UHGV-2042317_20	eggNOG-mapper	1118055.CAGU01000013_gene794	VRR_NUC	NA
UHGV-2042317_20	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2042317_21	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2042317_21	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2042317_21	UniRef90	UniRef90_A0A348Z935	DEAD/DEAH box helicase	NA
UHGV-2042317_21	eggNOG-mapper	97138.C820_00220	snf2 family	NA
UHGV-2042317_21	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2042317_21	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2042317_21	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2042317_21	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2042317_21	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2042317_22	Structural annotation	PF09889	NA	NA
UHGV-2042317_23	Structural annotation	PF10571	NA	NA
UHGV-2042317_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2042317_25	UniRef90	UniRef90_A0A415TAG9	NA	NA
UHGV-2042317_25	eggNOG-mapper	1219626.HMPREF1639_07135	sigma factor activity	NA
UHGV-2042317_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2042317_25	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-2042317_26	AcrCatalog	cluster_211731	NA	NA
UHGV-2042317_26	Pfam	PF20505	NA	DUF6731
UHGV-2042317_26	Structural annotation	PF20505	NA	NA
UHGV-2042317_27	AcrCatalog	cluster_138565	NA	NA
UHGV-2042317_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2042317_28	UniRef90	UniRef90_UPI001B3C9B19	helix-turn-helix domain-containing protein	NA
UHGV-2042317_28	eggNOG-mapper	374526.A5GYP7_9CAUD	endonuclease activity	NA
UHGV-2042317_28	Structural annotation	PF07141	NA	NA
UHGV-2042317_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2042317_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2042317_29	UniRef90	UniRef90_UPI001B3C8BA8	terminase family protein	NA
UHGV-2042317_29	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-2042317_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2042317_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2042317_29	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2042317_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-2042317_30	UniRef90	UniRef90_UPI001B3C997D	phage capsid protein	NA
UHGV-2042317_30	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2042317_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2042317_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2042317_31	UniRef90	UniRef90_UPI001B3C97A7	phage minor capsid protein	NA
UHGV-2042317_31	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-2042317_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2042317_31	COG	COG2369	NA	NA
UHGV-2042317_31	Structural annotation	PF06152, COG2369	NA	NA
UHGV-2042317_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2042317_33	UniRef90	UniRef90_UPI001B3C6D0D	phage scaffolding protein	NA
UHGV-2042317_33	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-2042317_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2042317_33	Structural annotation	PF06810	NA	NA
UHGV-2042317_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-2042317_34	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2042317_34	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2042317_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2042317_35	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2042317_35	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-2042317_36	PHROG	phrog_3366	NA	unknown function
UHGV-2042317_36	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2042317_36	Pfam	PF20536	NA	DUF6751
UHGV-2042317_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2042317_37	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-2042317_37	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2042317_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2042317_37	Structural annotation	PF11114	NA	NA
UHGV-2042317_38	PHROG	phrog_3266	tail completion	connector
UHGV-2042317_38	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-2042317_38	Structural annotation	PF20765	NA	NA
UHGV-2042317_39	PHROG	phrog_3099	NA	unknown function
UHGV-2042317_39	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2042317_39	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2042317_40	PHROG	phrog_11299	NA	unknown function
UHGV-2042317_40	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2042317_40	Structural annotation	PF10666	NA	NA
UHGV-2042317_41	PHROG	phrog_706	NA	unknown function
UHGV-2042317_41	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-2042317_41	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-2042317_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2042317_41	Structural annotation	PF06854	NA	NA
UHGV-2042317_42	PHROG	phrog_5319	outer membrane protein	other
UHGV-2042317_42	UniRef90	UniRef90_A0A1Q6JN93	zinc_ribbon_2 domain-containing protein	NA
UHGV-2042317_42	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-2042317_42	COG	COG3103	NA	NA
UHGV-2042317_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2042317_43	UniRef90	UniRef90_A0A2N0UYY1	Phage-related protein	NA
UHGV-2042317_43	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-2042317_43	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2042317_43	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2042317_44	PHROG	phrog_1194	NA	unknown function
UHGV-2042317_44	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-2042317_44	Pfam	PF20458	NA	DUF6711
UHGV-2042317_44	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2042317_45	PHROG	phrog_18190	NA	unknown function
UHGV-2042317_45	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-2042317_45	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2042317_48	PHROG	phrog_199	holin	lysis
UHGV-2042317_48	UniRef90	UniRef90_A0A348ZBJ4	Holin	NA
UHGV-2042317_48	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-2042317_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2042317_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2042317_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2042317_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2042317_49	KOfam	K07273	acm; lysozyme	NA
UHGV-2042317_49	PHROG	phrog_291	endolysin	lysis
UHGV-2042317_49	UniRef90	UniRef90_R7NMS6	Glycosyl hydrolase family 25	NA
UHGV-2042317_49	eggNOG-mapper	877420.ATVW01000004_gene383	Glycosyl hydrolases family 25	NA
UHGV-2042317_49	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2042317_49	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2042317_49	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2042317_49	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-2042317_51	KOfam	K03312	gltS; glutamate:Na+ symporter, ESS family	NA
UHGV-2042317_51	UniRef90	UniRef90_A0A4P8XXA9	Sodium/glutamate symporter	NA
UHGV-2042317_51	eggNOG-mapper	1042156.CXIVA_10980	Catalyzes the sodium-dependent transport of glutamate	NA
UHGV-2042317_51	Pfam	PF03616	Sodium/glutamate symporter	Glt_symporter
UHGV-2042317_51	NCBIFam	TIGR00210.1	sodium/glutamate symporter	NA
UHGV-2042317_51	COG	COG0786	Na+/glutamate symporter	NA
UHGV-2042317_51	HAMAP	MF_02062	Sodium/glutamate symporter [gltS]	NA