UHGV-2043895

Genome information

Genome length 35,772 bps

CDS count 48

Completeness 88.95% (medium-quality)

geNomad score 0.9660

Prediction confidence Confident

Genome information
Genome ID	UHGV-2043895
vOTU ID	vOTU-022858
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029247\|Ga0168719_1000017\|provirus_8446_44217
BioSample	SAMEA2737700
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9660
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.32
Jumbo phage	No

Genome content
Genome length	35,772 bps
GC content	40.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	89.35%
Average CDS length	669.50 bps
tRNA count	6
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2043895_1	KOfam	K17734	aprX; serine protease AprX [EC:3.4.21.-]	NA
UHGV-2043895_1	PHROG	phrog_3677	protease	other
UHGV-2043895_1	UniRef90	UniRef90_A0A3C0J7I0	Peptidase_S8 domain-containing protein	NA
UHGV-2043895_1	eggNOG-mapper	511680.BUTYVIB_02550	Subtilase family	NA
UHGV-2043895_1	PADLOC	subtilase	NA	NA
UHGV-2043895_1	Pfam	PF00082	Subtilase family	Peptidase_S8
UHGV-2043895_1	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-2043895_2	KOfam	K14059	int; integrase	NA
UHGV-2043895_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2043895_2	UniRef90	UniRef90_E6LJI2	Site-specific recombinase, phage integrase family	NA
UHGV-2043895_2	eggNOG-mapper	1095750.HMPREF9970_1001	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2043895_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2043895_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2043895_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2043895_3	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-2043895_3	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2043895_3	UniRef90	UniRef90_UPI00156F0B88	type I restriction endonuclease	NA
UHGV-2043895_3	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-2043895_3	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-2043895_3	COG	COG4748	NA	NA
UHGV-2043895_3	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-2043895_4	PHROG	phrog_87	metallo-protease	other
UHGV-2043895_4	UniRef90	UniRef90_S0J0Z9	Peptidase_M78 domain-containing protein	NA
UHGV-2043895_4	eggNOG-mapper	1235790.C805_00591	Zn peptidase	NA
UHGV-2043895_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2043895_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2043895_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2043895_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2043895_5	UniRef90	UniRef90_UPI001C10E005	helix-turn-helix domain-containing protein	NA
UHGV-2043895_5	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2043895_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2043895_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2043895_5	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2043895_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2043895_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2043895_7	UniRef90	UniRef90_UPI001C1244F8	helix-turn-helix transcriptional regulator	NA
UHGV-2043895_7	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-2043895_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2043895_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2043895_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2043895_9	PHROG	phrog_585	NA	unknown function
UHGV-2043895_9	UniRef90	UniRef90_A0A373ZCW0	NA	NA
UHGV-2043895_9	eggNOG-mapper	97138.C820_00628	NA	NA
UHGV-2043895_9	Pfam	PF10711	NA	DUF2513
UHGV-2043895_9	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-2043895_10	PHROG	phrog_36464	NA	unknown function
UHGV-2043895_10	eggNOG-mapper	1235790.C805_00019	NA	NA
UHGV-2043895_10	Structural annotation	PF09035	NA	NA
UHGV-2043895_14	PHROG	phrog_32437	NA	unknown function
UHGV-2043895_14	eggNOG-mapper	525897.Dbac_1129	PFAM Lytic transglycosylase catalytic	NA
UHGV-2043895_14	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-2043895_14	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-2043895_14	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-2043895_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2043895_15	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-2043895_15	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2043895_16	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2043895_16	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2043895_16	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-2043895_16	eggNOG-mapper	1121451.DESAM_20563	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2043895_16	Pfam	PF00075	RNase H	RNase_H
UHGV-2043895_16	COG	COG0328	Ribonuclease HI	NA
UHGV-2043895_16	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2043895_17	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-2043895_18	PHROG	phrog_8470	NA	unknown function
UHGV-2043895_18	UniRef90	UniRef90_UPI001D08730A	PcfJ domain-containing protein	NA
UHGV-2043895_18	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-2043895_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2043895_18	Structural annotation	PF14284	NA	NA
UHGV-2043895_19	PHROG	phrog_15077	NA	unknown function
UHGV-2043895_19	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-2043895_19	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-2043895_19	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2043895_20	PHROG	phrog_7566	NA	unknown function
UHGV-2043895_20	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-2043895_20	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-2043895_21	UniRef90	UniRef90_UPI000C866F85	NA	NA
UHGV-2043895_21	eggNOG-mapper	290402.Cbei_0730	NA	NA
UHGV-2043895_21	Pfam	PF14199	NA	DUF4317
UHGV-2043895_21	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-2043895_23	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2043895_23	UniRef90	UniRef90_UPI000E41BACA	NA	NA
UHGV-2043895_23	eggNOG-mapper	1205683.CAKR01000002_gene2789	NA	NA
UHGV-2043895_23	Pfam	PF14359	NA	DUF4406
UHGV-2043895_23	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2043895_23	Structural annotation	PF14359, TIGR02133, COG3613	NA	NA
UHGV-2043895_25	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-2043895_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2043895_26	UniRef90	UniRef90_A0A3A6KRB5	NA	NA
UHGV-2043895_26	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-2043895_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2043895_26	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-2043895_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2043895_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2043895_27	UniRef90	UniRef90_UPI001379A213	terminase small subunit	NA
UHGV-2043895_27	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-2043895_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2043895_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2043895_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2043895_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2043895_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2043895_28	UniRef90	UniRef90_UPI000E5CEDAF	PBSX family phage terminase large subunit	NA
UHGV-2043895_28	eggNOG-mapper	476272.RUMHYD_02845	Phage terminase, large subunit, PBSX family	NA
UHGV-2043895_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2043895_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2043895_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2043895_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2043895_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2043895_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-2043895_29	UniRef90	UniRef90_A0A3A6J7Z8	Phage portal protein	NA
UHGV-2043895_29	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2043895_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2043895_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2043895_30	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2043895_30	UniRef90	UniRef90_A0A3R6VT31	Phage_Mu_F domain-containing protein	NA
UHGV-2043895_30	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-2043895_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2043895_30	COG	COG2369	NA	NA
UHGV-2043895_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2043895_32	PHROG	phrog_372	tail protein	tail
UHGV-2043895_32	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-2043895_32	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-2043895_32	Pfam	PF05895	NA	DUF859
UHGV-2043895_32	COG	COG4675	Phage tail collar domain	NA
UHGV-2043895_32	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-2043895_33	Structural annotation	PF15911	NA	NA
UHGV-2043895_34	PHROG	phrog_1863	NA	unknown function
UHGV-2043895_34	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-2043895_35	PHROG	phrog_18218	NA	unknown function
UHGV-2043895_35	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-2043895_35	eggNOG-mapper	411459.RUMOBE_00910	NA	NA
UHGV-2043895_36	UniRef90	UniRef90_UPI001C3B0341	CHAP domain-containing protein	NA
UHGV-2043895_36	eggNOG-mapper	552396.HMPREF0863_02311	CHAP domain	NA
UHGV-2043895_36	Pfam	PF05257	CHAP domain	CHAP
UHGV-2043895_36	COG	COG3942	Surface antigen	NA
UHGV-2043895_36	Structural annotation	TIGR02594, COG3942	NA	NA
UHGV-2043895_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2043895_37	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-2043895_37	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-2043895_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2043895_37	Structural annotation	PF06810	NA	NA
UHGV-2043895_38	PHROG	phrog_212	major head protein	head and packaging
UHGV-2043895_38	UniRef90	UniRef90_A0A3A6J9J0	Phage capsid protein	NA
UHGV-2043895_38	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-2043895_38	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2043895_40	PHROG	phrog_1236	head protein	head and packaging
UHGV-2043895_40	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-2043895_40	Structural annotation	PF05135	NA	NA
UHGV-2043895_41	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-2043895_41	UniRef90	UniRef90_A0A416AFR5	Head-tail adaptor protein	NA
UHGV-2043895_41	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-2043895_41	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2043895_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2043895_42	UniRef90	UniRef90_A0A374UQG1	HK97 gp10 family phage protein	NA
UHGV-2043895_42	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-2043895_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2043895_42	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2043895_43	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-2043895_43	Structural annotation	PF12691	NA	NA
UHGV-2043895_44	PHROG	phrog_885	major tail protein	tail
UHGV-2043895_45	PHROG	phrog_18110	NA	unknown function
UHGV-2043895_45	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-2043895_45	COG	COG4926	Phage-related protein	NA
UHGV-2043895_46	UniRef90	UniRef90_A0A3A8X3A3	NA	NA
UHGV-2043895_46	eggNOG-mapper	511680.BUTYVIB_02543	NA	NA
UHGV-2043895_47	UniRef90	UniRef90_A0A174Z414	ABC-2 family transporter protein	NA
UHGV-2043895_47	eggNOG-mapper	511680.BUTYVIB_02541	CytoplasmicMembrane, score	NA
UHGV-2043895_48	KOfam	K25152	gldA; gliding motility-associated transport system ATP-binding protein	NA
UHGV-2043895_48	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-2043895_48	UniRef90	UniRef90_R5LGF8	ABC transporter ATP-binding protein	NA
UHGV-2043895_48	eggNOG-mapper	511680.BUTYVIB_02540	ABC transporter	NA
UHGV-2043895_48	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-2043895_48	COG	COG1131	ABC-type multidrug transport system, ATPase component	NA
UHGV-2043895_48	Structural annotation	PF00005, MF_01005, TIGR03740, COG1131	NA	NA