UHGV-2045263

Genome information

Genome length 30,552 bps

CDS count 43

Completeness 91.40% (high-quality)

geNomad score 0.9648

Prediction confidence Confident

Genome information
Genome ID	UHGV-2045263
vOTU ID	vOTU-059668
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029295\|Ga0134373_100093\|provirus_3_30554
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9648
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.8
Jumbo phage	No

Genome content
Genome length	30,552 bps
GC content	54.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.54%
Average CDS length	666.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2045263_2	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-2045263_2	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-2045263_2	UniRef90	UniRef90_UPI000C9C9A2A	helix-turn-helix domain-containing protein	NA
UHGV-2045263_2	eggNOG-mapper	1384054.N790_00530	Helix-turn-helix XRE-family like proteins	NA
UHGV-2045263_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2045263_2	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2045263_2	Structural annotation	PF12844, MF_00535, TIGR02607, COG3093, COG2856	NA	NA
UHGV-2045263_3	eggNOG-mapper	1123269.NX02_01365	NA	NA
UHGV-2045263_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2045263_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2045263_4	UniRef90	UniRef90_A0A8F1E8L2	Peptidase_S24 domain-containing protein	NA
UHGV-2045263_4	eggNOG-mapper	349741.Amuc_1794	Peptidase S24-like	NA
UHGV-2045263_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2045263_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2045263_4	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-2045263_6	UniRef90	UniRef90_UPI000C998346	superinfection exclusion B family protein	NA
UHGV-2045263_6	Pfam	PF14163	Super-infection exclusion protein B	SieB
UHGV-2045263_11	eggNOG-mapper	929704.Myrod_0663	NA	NA
UHGV-2045263_12	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-2045263_12	UniRef90	UniRef90_R6J8Z4	NA	NA
UHGV-2045263_12	eggNOG-mapper	1242969.ATCC51562_1602	NA	NA
UHGV-2045263_12	Pfam	PF12684	NA	DUF3799
UHGV-2045263_12	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-2045263_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2045263_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2045263_15	PHROG	phrog_3136	NA	unknown function
UHGV-2045263_15	UniRef90	UniRef90_A0A5B5WVN6	ASCH domain-containing protein	NA
UHGV-2045263_15	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2045263_15	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-2045263_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2045263_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2045263_18	UniRef90	UniRef90_A0A410S8Z8	DNA helicase	NA
UHGV-2045263_18	eggNOG-mapper	349741.Amuc_1377	DnaB-like helicase C terminal domain	NA
UHGV-2045263_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2045263_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2045263_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-2045263_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2045263_20	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-2045263_20	PHROG	phrog_16625	NA	unknown function
UHGV-2045263_20	UniRef90	UniRef90_A0A4Q5IVQ1	ADPrib_exo_Tox domain-containing protein	NA
UHGV-2045263_20	eggNOG-mapper	563192.HMPREF0179_00384	Phage Mu protein F like protein	NA
UHGV-2045263_20	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2045263_20	COG	COG2369	NA	NA
UHGV-2045263_22	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-2045263_22	UniRef90	UniRef90_UPI0009AEAD69	ubiquitin carboxyl-hydrolase	NA
UHGV-2045263_22	eggNOG-mapper	521000.PROVRETT_06006	NA	NA
UHGV-2045263_22	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-2045263_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2045263_23	UniRef90	UniRef90_A0A1C7PDG0	p-loop containing nucleoside triphosphate hydrolase	NA
UHGV-2045263_23	eggNOG-mapper	411459.RUMOBE_01049	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-2045263_23	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2045263_23	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-2045263_24	Structural annotation	PF05587, PF03388, COG3506	NA	NA
UHGV-2045263_26	UniRef90	UniRef90_UPI001EDF593B	NA	NA
UHGV-2045263_29	PHROG	phrog_315	endolysin	lysis
UHGV-2045263_29	UniRef90	UniRef90_A0A410SED1	PG_binding_3 domain-containing protein	NA
UHGV-2045263_29	eggNOG-mapper	349741.Amuc_1360	Glycosyl hydrolase 108	NA
UHGV-2045263_29	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-2045263_29	COG	COG3926	Lysozyme family protein	NA
UHGV-2045263_29	Structural annotation	PF09374, NF040573, COG3926	NA	NA
UHGV-2045263_30	PHROG	phrog_113	portal protein	head and packaging
UHGV-2045263_30	UniRef90	UniRef90_A0A4Q5IVR1	NA	NA
UHGV-2045263_30	eggNOG-mapper	794903.OPIT5_08305	NA	NA
UHGV-2045263_30	Pfam	PF06074	NA	DUF935
UHGV-2045263_30	COG	COG4383	NA	NA
UHGV-2045263_33	KOfam	K06079	cutF, nlpE; copper homeostasis protein (lipoprotein)	NA
UHGV-2045263_33	UniRef90	UniRef90_A0A641W1J7	Copper resistance protein NlpE	NA
UHGV-2045263_33	eggNOG-mapper	349741.Amuc_1432	regulation of cell-substrate adhesion	NA
UHGV-2045263_33	Pfam	PF04170	NlpE N-terminal domain	NlpE
UHGV-2045263_33	COG	COG3015	NA	NA
UHGV-2045263_34	PHROG	phrog_328	head maturation protease	head and packaging
UHGV-2045263_34	UniRef90	UniRef90_UPI001C023827	phage protease	NA
UHGV-2045263_34	eggNOG-mapper	794903.OPIT5_08310	P22 coat protein - gene protein 5	NA
UHGV-2045263_34	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-2045263_35	eggNOG-mapper	521674.Plim_2126	NA	NA
UHGV-2045263_35	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-2045263_35	Structural annotation	PF20911, MF_04133, NF041162, COG4397	NA	NA
UHGV-2045263_36	Structural annotation	PF21190, TIGR03511, COG4935	NA	NA
UHGV-2045263_42	Structural annotation	PF14594, TIGR01646, COG4379	NA	NA
UHGV-2045263_43	Structural annotation	PF18404, MF_01520, TIGR03469, COG1442	NA	NA