UHGV-2045328

Genome information

Genome length 37,945 bps

CDS count 52

Completeness 95.32% (high-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-2045328
vOTU ID	vOTU-010758
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029339\|Ga0242823_1000016\|provirus_300571_338515
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.78
Jumbo phage	No

Genome content
Genome length	37,945 bps
GC content	40.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	89.55%
Average CDS length	656.02 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2045328_1	KOfam	K08678	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]	NA
UHGV-2045328_1	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-2045328_1	UniRef90	UniRef90_A0A2N0UQV5	dTDP-glucose 4,6-dehydratase	NA
UHGV-2045328_1	eggNOG-mapper	877411.JMMA01000002_gene2599	epimerase dehydratase	NA
UHGV-2045328_1	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-2045328_1	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-2045328_1	Structural annotation	PF16363, MF_01166, TIGR01181, COG0451	NA	NA
UHGV-2045328_2	KOfam	K07271	licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]	NA
UHGV-2045328_2	UniRef90	UniRef90_A0A3D3D7N5	Epimerase domain-containing protein	NA
UHGV-2045328_2	eggNOG-mapper	697329.Rumal_2992	LicD family	NA
UHGV-2045328_2	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-2045328_2	Pfam	PF04991	LicD family	LicD
UHGV-2045328_2	COG	COG3475	Phosphorylcholine metabolism protein LicD	NA
UHGV-2045328_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2045328_3	PHROG	phrog_18293	methyltransferase	other
UHGV-2045328_3	UniRef90	UniRef90_A0A2N0UI24	Methyltransferase	NA
UHGV-2045328_3	eggNOG-mapper	469616.FMAG_02606	DNA methylase	NA
UHGV-2045328_3	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2045328_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2045328_3	COG	COG0863	DNA modification methylase	NA
UHGV-2045328_4	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2045328_4	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2045328_4	UniRef90	UniRef90_A0A412UM21	Methyltransferase	NA
UHGV-2045328_4	eggNOG-mapper	1226322.HMPREF1545_02860	NA	NA
UHGV-2045328_4	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-2045328_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2045328_4	COG	COG0863	DNA modification methylase	NA
UHGV-2045328_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2045328_5	PHROG	phrog_20388	endolysin	lysis
UHGV-2045328_5	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2045328_5	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2045328_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2045328_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2045328_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2045328_5	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-2045328_6	PHROG	phrog_199	holin	lysis
UHGV-2045328_6	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-2045328_6	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2045328_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2045328_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2045328_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2045328_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2045328_8	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-2045328_8	Structural annotation	PF01664	NA	NA
UHGV-2045328_9	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2045328_10	PHROG	phrog_1194	NA	unknown function
UHGV-2045328_10	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-2045328_10	Pfam	PF20458	NA	DUF6711
UHGV-2045328_10	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2045328_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2045328_11	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-2045328_11	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2045328_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2045328_11	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2045328_12	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-2045328_14	PHROG	phrog_706	NA	unknown function
UHGV-2045328_14	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-2045328_14	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-2045328_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2045328_14	Structural annotation	PF06854	NA	NA
UHGV-2045328_15	PHROG	phrog_11299	NA	unknown function
UHGV-2045328_15	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2045328_15	Structural annotation	PF10666	NA	NA
UHGV-2045328_16	PHROG	phrog_3099	NA	unknown function
UHGV-2045328_16	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2045328_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2045328_17	PHROG	phrog_3266	tail completion	connector
UHGV-2045328_17	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-2045328_17	Structural annotation	PF20765	NA	NA
UHGV-2045328_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2045328_18	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-2045328_18	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2045328_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2045328_18	Structural annotation	PF11114	NA	NA
UHGV-2045328_19	PHROG	phrog_3366	NA	unknown function
UHGV-2045328_19	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2045328_19	Pfam	PF20536	NA	DUF6751
UHGV-2045328_19	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2045328_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2045328_20	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2045328_20	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-2045328_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-2045328_21	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2045328_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2045328_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2045328_22	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-2045328_22	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2045328_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2045328_22	Structural annotation	PF06810	NA	NA
UHGV-2045328_23	PHROG	phrog_2616	NA	unknown function
UHGV-2045328_23	Structural annotation	PF01281	NA	NA
UHGV-2045328_24	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2045328_24	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-2045328_24	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-2045328_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2045328_26	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-2045328_26	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-2045328_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2045328_26	COG	COG2369	NA	NA
UHGV-2045328_26	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-2045328_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-2045328_27	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-2045328_27	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2045328_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2045328_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2045328_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2045328_28	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-2045328_28	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2045328_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2045328_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2045328_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2045328_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2045328_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2045328_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2045328_29	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-2045328_29	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-2045328_29	Pfam	PF07374	NA	DUF1492
UHGV-2045328_29	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-2045328_31	PHROG	phrog_8684	NA	unknown function
UHGV-2045328_31	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-2045328_31	eggNOG-mapper	411477.PARMER_02066	YopX protein	NA
UHGV-2045328_31	Pfam	PF09643	YopX protein	YopX
UHGV-2045328_31	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2045328_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2045328_32	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2045328_32	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-2045328_32	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-2045328_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2045328_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2045328_32	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-2045328_34	PHROG	phrog_824	NA	unknown function
UHGV-2045328_34	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-2045328_34	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-2045328_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2045328_34	Structural annotation	PF08774	NA	NA
UHGV-2045328_35	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2045328_35	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2045328_35	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-2045328_35	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-2045328_35	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2045328_35	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2045328_35	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-2045328_36	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2045328_36	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-2045328_36	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-2045328_36	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2045328_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2045328_36	Structural annotation	PF14297	NA	NA
UHGV-2045328_37	PHROG	phrog_398	NA	unknown function
UHGV-2045328_37	UniRef90	UniRef90_UPI000C7B20DA	putative HNHc nuclease	NA
UHGV-2045328_37	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-2045328_37	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-2045328_37	Structural annotation	PF16784	NA	NA
UHGV-2045328_38	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2045328_38	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2045328_38	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-2045328_38	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2045328_38	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2045328_38	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2045328_38	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-2045328_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2045328_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2045328_39	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-2045328_39	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-2045328_39	Pfam	PF03837	RecT family	RecT
UHGV-2045328_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2045328_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2045328_39	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2045328_40	PHROG	phrog_674	NA	unknown function
UHGV-2045328_40	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-2045328_40	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-2045328_40	Pfam	PF07083	NA	DUF1351
UHGV-2045328_40	Structural annotation	PF07083	NA	NA
UHGV-2045328_41	Pfam	PF04570	zinc-finger of the FCS-type, C2-C2	zf-FLZ
UHGV-2045328_41	Structural annotation	PF04570, COG2075	NA	NA
UHGV-2045328_44	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-2045328_44	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2045328_49	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2045328_49	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-2045328_49	UniRef90	UniRef90_A0A355TWJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-2045328_49	eggNOG-mapper	525254.HMPREF0072_0267	DNA-binding helix-turn-helix protein	NA
UHGV-2045328_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2045328_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2045328_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2045328_49	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2045328_50	PHROG	phrog_16442	NA	unknown function
UHGV-2045328_50	UniRef90	UniRef90_A0A373KW38	Nucleotide-binding protein	NA
UHGV-2045328_50	eggNOG-mapper	397291.C804_06293	Predicted nucleotide-binding protein containing TIR-like domain	NA
UHGV-2045328_50	PADLOC	Effector_00069	TIR	CBASS
UHGV-2045328_50	Pfam	PF10137	CAP12/Pycsar effector protein, TIR domain	CAP12-PCTIR_TIR
UHGV-2045328_50	COG	COG4271	Predicted nucleotide-binding protein containing TIR -like domain	NA
UHGV-2045328_50	Structural annotation	PF10137, COG4271	NA	NA
UHGV-2045328_51	KOfam	K14059	int; integrase	NA
UHGV-2045328_51	PHROG	phrog_1	integrase	integration and excision
UHGV-2045328_51	UniRef90	UniRef90_A0A412L7T7	Site-specific integrase	NA
UHGV-2045328_51	eggNOG-mapper	1540257.JQMW01000011_gene2033	Phage integrase family	NA
UHGV-2045328_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2045328_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2045328_51	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2045328_52	UniRef90	UniRef90_UPI0015F455B4	sigma-70 family RNA polymerase sigma factor	NA