UHGV-2045552

Genome information

Genome length 51,154 bps

CDS count 88

Completeness 82.85% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-2045552
vOTU ID	vOTU-041602
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029238\|Ga0168766_100454\|provirus_12034_63187
BioSample	SAMEA2737747
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.62
Jumbo phage	No

Genome content
Genome length	51,154 bps
GC content	37.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	88
CDS density	86.96%
Average CDS length	509.25 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2045552_1	eggNOG-mapper	658655.HMPREF0988_00920	NA	NA
UHGV-2045552_2	PHROG	phrog_21718	NA	unknown function
UHGV-2045552_2	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-2045552_2	Structural annotation	NF033819	NA	NA
UHGV-2045552_3	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-2045552_4	PHROG	phrog_16490	NA	unknown function
UHGV-2045552_4	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-2045552_5	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-2045552_6	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-2045552_7	PHROG	phrog_1233	NA	unknown function
UHGV-2045552_7	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-2045552_7	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-2045552_9	PHROG	phrog_806	NA	unknown function
UHGV-2045552_9	UniRef90	UniRef90_A0A6N2TTY9	Telomeric repeat-binding factor 2	NA
UHGV-2045552_9	eggNOG-mapper	1160721.RBI_I01524	NA	NA
UHGV-2045552_9	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-2045552_10	PHROG	phrog_9418	NA	unknown function
UHGV-2045552_10	eggNOG-mapper	658655.HMPREF0988_00910	NA	NA
UHGV-2045552_10	Structural annotation	PF10233	NA	NA
UHGV-2045552_11	UniRef90	UniRef90_UPI0013798457	ribbon-helix-helix protein, CopG family	NA
UHGV-2045552_11	eggNOG-mapper	1235793.C809_02220	NA	NA
UHGV-2045552_11	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-2045552_13	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2045552_13	UniRef90	UniRef90_A0A3T0KZD9	NA	NA
UHGV-2045552_13	eggNOG-mapper	1129192.A0A0E3D9L6_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-2045552_14	Structural annotation	PF13973	NA	NA
UHGV-2045552_18	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2045552_18	UniRef90	UniRef90_A0A358PSC0	Cro/Cl family transcriptional regulator	NA
UHGV-2045552_18	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2045552_18	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2045552_18	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2045552_19	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-2045552_19	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2045552_19	UniRef90	UniRef90_UPI00030293B0	toxin RelE	NA
UHGV-2045552_19	eggNOG-mapper	500632.CLONEX_04164	Addiction module toxin, RelE StbE family	NA
UHGV-2045552_19	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-2045552_19	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-2045552_19	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-2045552_20	eggNOG-mapper	500632.CLONEX_02614	NA	NA
UHGV-2045552_24	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-2045552_24	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-2045552_33	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2045552_33	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-2045552_33	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-2045552_33	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2045552_33	COG	COG5410	NA	NA
UHGV-2045552_33	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-2045552_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2045552_34	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-2045552_34	Structural annotation	PF02996	NA	NA
UHGV-2045552_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-2045552_35	UniRef90	UniRef90_A0A4Q5C6V0	Phage portal protein	NA
UHGV-2045552_35	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2045552_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2045552_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2045552_37	eggNOG-mapper	411470.RUMGNA_00122	NA	NA
UHGV-2045552_38	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-2045552_39	PHROG	phrog_909	major head protein	head and packaging
UHGV-2045552_39	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-2045552_39	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-2045552_40	PHROG	phrog_29	major head protein	head and packaging
UHGV-2045552_40	UniRef90	UniRef90_A0A1C5WIT9	Phage major capsid protein E	NA
UHGV-2045552_40	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-2045552_40	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2045552_40	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-2045552_41	Structural annotation	PF21169	NA	NA
UHGV-2045552_42	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-2045552_42	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2045552_43	PHROG	phrog_37604	NA	unknown function
UHGV-2045552_43	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-2045552_44	PHROG	phrog_18218	NA	unknown function
UHGV-2045552_44	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-2045552_44	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-2045552_44	Structural annotation	PF06946	NA	NA
UHGV-2045552_45	KOfam	K07273	acm; lysozyme	NA
UHGV-2045552_45	PHROG	phrog_291	endolysin	lysis
UHGV-2045552_45	UniRef90	UniRef90_A0A173YXL7	N-acetylmuramoyl-L-alanine amidase sle1	NA
UHGV-2045552_45	eggNOG-mapper	556261.HMPREF0240_01272	Glycosyl hydrolases family 25	NA
UHGV-2045552_45	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2045552_45	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2045552_45	Pfam	PF01476	LysM domain	LysM
UHGV-2045552_45	COG	COG1388	LysM repeat	NA
UHGV-2045552_45	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA
UHGV-2045552_46	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-2045552_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2045552_47	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-2045552_47	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-2045552_47	AcrCatalog	cluster_24841	NA	NA
UHGV-2045552_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2045552_47	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-2045552_48	PHROG	phrog_419	NA	unknown function
UHGV-2045552_48	UniRef90	UniRef90_A0A0V8CZM6	Phage-associated protein	NA
UHGV-2045552_48	eggNOG-mapper	1123511.KB905860_gene2302	NA	NA
UHGV-2045552_49	Structural annotation	PF05657	NA	NA
UHGV-2045552_50	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-2045552_50	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2045552_51	PHROG	phrog_36112	NA	unknown function
UHGV-2045552_51	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-2045552_51	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-2045552_51	Structural annotation	PF16478	NA	NA
UHGV-2045552_53	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-2045552_53	UniRef90	UniRef90_UPI001D081BB8	transglycosylase SLT domain-containing protein	NA
UHGV-2045552_53	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-2045552_53	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-2045552_53	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2045552_54	PHROG	phrog_1194	NA	unknown function
UHGV-2045552_54	eggNOG-mapper	585501.HMPREF6123_0824	NA	NA
UHGV-2045552_54	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2045552_55	PHROG	phrog_13879	NA	unknown function
UHGV-2045552_55	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-2045552_55	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-2045552_56	PHROG	phrog_18725	NA	unknown function
UHGV-2045552_56	eggNOG-mapper	742740.HMPREF9474_03517	NA	NA
UHGV-2045552_57	PHROG	phrog_13141	NA	unknown function
UHGV-2045552_57	eggNOG-mapper	665950.HMPREF1025_02519	NA	NA
UHGV-2045552_58	PHROG	phrog_27545	NA	unknown function
UHGV-2045552_58	eggNOG-mapper	1235799.C818_04237	NA	NA
UHGV-2045552_59	eggNOG-mapper	411470.RUMGNA_00122	NA	NA
UHGV-2045552_60	PHROG	phrog_30034	NA	unknown function
UHGV-2045552_60	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-2045552_60	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-2045552_61	UniRef90	UniRef90_A0A1C5WLL2	HTH cro/C1-type domain-containing protein	NA
UHGV-2045552_61	eggNOG-mapper	411469.EUBHAL_03100	NA	NA
UHGV-2045552_61	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2045552_61	Structural annotation	PF13443, PF00717, MF_00015, NF041951, TIGR02228, COG3655	NA	NA
UHGV-2045552_63	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2045552_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2045552_63	UniRef90	UniRef90_UPI001D06FE9D	helix-turn-helix transcriptional regulator	NA
UHGV-2045552_63	eggNOG-mapper	97139.C824_05937	Helix-turn-helix XRE-family like proteins	NA
UHGV-2045552_63	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2045552_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2045552_63	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2045552_66	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2045552_66	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2045552_66	UniRef90	UniRef90_A0A6N2U2M0	Phage antirepressor protein KilAC domain protein	NA
UHGV-2045552_66	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-2045552_66	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2045552_66	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2045552_66	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2045552_66	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2045552_68	PHROG	phrog_4292	NA	unknown function
UHGV-2045552_68	eggNOG-mapper	411460.RUMTOR_01375	NA	NA
UHGV-2045552_71	PHROG	phrog_7964	NA	unknown function
UHGV-2045552_71	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-2045552_71	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-2045552_71	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-2045552_71	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-2045552_71	Structural annotation	MF_01691, NF040481, COG2171	NA	NA
UHGV-2045552_74	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2045552_74	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-2045552_74	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2045552_75	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2045552_75	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2045552_75	UniRef90	UniRef90_F3AXU7	RNase H type-1 domain-containing protein	NA
UHGV-2045552_75	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-2045552_75	Pfam	PF00075	RNase H	RNase_H
UHGV-2045552_75	COG	COG0328	Ribonuclease HI	NA
UHGV-2045552_75	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2045552_77	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2045552_77	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2045552_77	UniRef90	UniRef90_A0A828T4X7	ParB domain-containing protein	NA
UHGV-2045552_77	eggNOG-mapper	665950.HMPREF1025_02549	Belongs to the ParB family	NA
UHGV-2045552_77	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2045552_77	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2045552_77	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2045552_77	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2045552_78	PHROG	phrog_7566	NA	unknown function
UHGV-2045552_78	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-2045552_80	PHROG	phrog_17690	NA	unknown function
UHGV-2045552_80	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-2045552_81	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-2045552_81	UniRef90	UniRef90_F3AXU1	Methyltransferase	NA
UHGV-2045552_81	eggNOG-mapper	665950.HMPREF1025_02545	DNA methylase	NA
UHGV-2045552_81	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-2045552_81	COG	COG0863	DNA modification methylase	NA
UHGV-2045552_81	Structural annotation	NF008572, COG0863	NA	NA
UHGV-2045552_82	UniRef90	UniRef90_A0A6I3UG23	Site-specific DNA-methyltransferase (Fragment)	NA
UHGV-2045552_82	eggNOG-mapper	665950.HMPREF1025_02545	DNA methylase	NA
UHGV-2045552_82	COG	COG0863	DNA modification methylase	NA
UHGV-2045552_82	Structural annotation	PF13649	NA	NA
UHGV-2045552_83	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2045552_83	eggNOG-mapper	665950.HMPREF1025_02544	NA	NA
UHGV-2045552_84	PHROG	phrog_4152	NA	unknown function
UHGV-2045552_85	PHROG	phrog_25555	NA	unknown function
UHGV-2045552_86	PHROG	phrog_30671	NA	unknown function
UHGV-2045552_86	UniRef90	UniRef90_A0A6I3QIW7	DNA-binding response regulator	NA
UHGV-2045552_87	PHROG	phrog_15198	NA	unknown function
UHGV-2045552_87	UniRef90	UniRef90_F3AXT6	NA	NA
UHGV-2045552_87	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-2045552_87	Pfam	PF04448	NA	DUF551
UHGV-2045552_88	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2045552_88	UniRef90	UniRef90_A0A564VXK1	Sigma70_r4 domain-containing protein	NA
UHGV-2045552_88	eggNOG-mapper	665950.HMPREF1025_02539	sigma factor activity	NA
UHGV-2045552_88	Pfam	PF07374	NA	DUF1492
UHGV-2045552_88	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2045552_88	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA