UHGV-2046252

Genome information

Genome length 31,860 bps

CDS count 48

Completeness 79.53% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-2046252
vOTU ID	vOTU-016219
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029341\|Ga0243736_1000007\|provirus_2_31861
BioSample	SAMN05971439
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.55
Jumbo phage	No

Genome content
Genome length	31,860 bps
GC content	60.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.88%
Average CDS length	614.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2046252_2	PHROG	phrog_740	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2046252_2	UniRef90	UniRef90_A0A086ZNU8	Gp77 phage protein	NA
UHGV-2046252_2	eggNOG-mapper	398513.BBNG_00830	HNH endonuclease	NA
UHGV-2046252_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2046252_3	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-2046252_3	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2046252_3	UniRef90	UniRef90_A0A0G9MAU2	Oligoribonuclease	NA
UHGV-2046252_3	eggNOG-mapper	566552.BIFCAT_00884	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-2046252_3	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-2046252_3	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-2046252_7	eggNOG-mapper	1680.BADO_1257	NA	NA
UHGV-2046252_7	Structural annotation	PF19885, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-2046252_10	PHROG	phrog_774	NA	unknown function
UHGV-2046252_10	UniRef90	UniRef90_A0A087DRP7	NA	NA
UHGV-2046252_10	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-2046252_10	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2046252_11	Structural annotation	PF06013, MF_00683, NF035934	NA	NA
UHGV-2046252_12	PHROG	phrog_908	NA	unknown function
UHGV-2046252_12	UniRef90	UniRef90_A0A086ZNV6	PhnA protein	NA
UHGV-2046252_12	eggNOG-mapper	1435051.BMOU_0239	NA	NA
UHGV-2046252_13	PHROG	phrog_1808	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2046252_13	UniRef90	UniRef90_A0A3G2KFW0	HNH endonuclease	NA
UHGV-2046252_13	eggNOG-mapper	350058.Mvan_4358	NA	NA
UHGV-2046252_14	PHROG	phrog_226	minor tail protein	tail
UHGV-2046252_14	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-2046252_15	PHROG	phrog_8680	NA	unknown function
UHGV-2046252_15	UniRef90	UniRef90_A0A087DRQ2	ParB-like protein	NA
UHGV-2046252_15	eggNOG-mapper	1680.BADO_1246	NA	NA
UHGV-2046252_15	Pfam	PF14386	NA	DUF4417
UHGV-2046252_15	Structural annotation	PF14386	NA	NA
UHGV-2046252_17	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-2046252_17	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-2046252_17	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-2046252_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2046252_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2046252_18	PHROG	phrog_104	portal protein	head and packaging
UHGV-2046252_18	UniRef90	UniRef90_UPI000C3130D9	phage portal protein	NA
UHGV-2046252_18	eggNOG-mapper	1273125.Rrhod_0599	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2046252_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2046252_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2046252_19	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-2046252_19	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-2046252_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-2046252_21	UniRef90	UniRef90_UPI000C30DF47	phage major capsid protein	NA
UHGV-2046252_21	eggNOG-mapper	1273125.Rrhod_0602	Phage capsid family	NA
UHGV-2046252_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2046252_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2046252_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2046252_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2046252_23	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2046252_23	UniRef90	UniRef90_A0A087BHJ5	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2046252_23	eggNOG-mapper	593907.Celgi_1301	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2046252_23	Structural annotation	PF09355	NA	NA
UHGV-2046252_24	PHROG	phrog_13779	NA	unknown function
UHGV-2046252_24	UniRef90	UniRef90_A0A087BHJ4	Phage associated protein	NA
UHGV-2046252_24	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-2046252_24	Pfam	PF19586	NA	DUF6093
UHGV-2046252_24	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-2046252_25	PHROG	phrog_19109	NA	unknown function
UHGV-2046252_25	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-2046252_25	Structural annotation	TIGR01725	NA	NA
UHGV-2046252_26	UniRef90	UniRef90_A0A076JJ59	Transcriptional regulator	NA
UHGV-2046252_26	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-2046252_26	Structural annotation	PF06141	NA	NA
UHGV-2046252_27	PHROG	phrog_2491	major tail protein	tail
UHGV-2046252_27	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-2046252_27	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-2046252_27	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-2046252_28	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-2046252_28	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-2046252_28	Structural annotation	PF08890	NA	NA
UHGV-2046252_29	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2046252_29	UniRef90	UniRef90_A0A3E5HJQ8	Phage tail tape measure protein	NA
UHGV-2046252_29	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-2046252_29	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2046252_29	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2046252_29	COG	COG5283	Phage-related tail protein	NA
UHGV-2046252_29	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2046252_30	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-2046252_30	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2046252_31	PHROG	phrog_538	minor tail protein	tail
UHGV-2046252_31	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-2046252_31	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-2046252_31	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2046252_31	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2046252_33	PHROG	phrog_9994	NA	unknown function
UHGV-2046252_33	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-2046252_33	Structural annotation	PF20747, PF08931	NA	NA
UHGV-2046252_35	eggNOG-mapper	1435051.BMOU_0220	NA	NA
UHGV-2046252_36	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-2046252_36	Structural annotation	PF08931	NA	NA
UHGV-2046252_37	KOfam	K14059	int; integrase	NA
UHGV-2046252_37	PHROG	phrog_1	integrase	integration and excision
UHGV-2046252_37	UniRef90	UniRef90_A0A1X3A1N7	Recombinase	NA
UHGV-2046252_37	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-2046252_37	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2046252_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2046252_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2046252_37	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-2046252_38	PHROG	phrog_28754	NA	unknown function
UHGV-2046252_38	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-2046252_38	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-2046252_39	PHROG	phrog_17147	NA	unknown function
UHGV-2046252_39	UniRef90	UniRef90_A0A0M4N1P7	Unassigned protein	NA
UHGV-2046252_39	eggNOG-mapper	1680.BADO_1222	NA	NA
UHGV-2046252_39	Structural annotation	PF21430	NA	NA
UHGV-2046252_40	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2046252_40	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2046252_40	UniRef90	UniRef90_UPI000A435E37	RNA-directed DNA polymerase	NA
UHGV-2046252_40	eggNOG-mapper	1680.BADO_1221	reverse transcriptase	NA
UHGV-2046252_40	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2046252_40	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2046252_40	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2046252_41	eggNOG-mapper	1680.BADO_1221	reverse transcriptase	NA
UHGV-2046252_41	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2046252_42	PHROG	phrog_37768	NA	unknown function
UHGV-2046252_43	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2046252_44	PHROG	phrog_1397	NA	unknown function
UHGV-2046252_44	UniRef90	UniRef90_A0A0G9M8G9	PRTRC system protein E	NA
UHGV-2046252_44	eggNOG-mapper	1680.BADO_1218	NA	NA
UHGV-2046252_45	KOfam	K07273	acm; lysozyme	NA
UHGV-2046252_45	PHROG	phrog_291	endolysin	lysis
UHGV-2046252_45	UniRef90	UniRef90_A0A076JNJ5	Lysin	NA
UHGV-2046252_45	eggNOG-mapper	1680.BADO_1217	Glycosyl hydrolases family 25	NA
UHGV-2046252_45	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2046252_45	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2046252_45	Pfam	PF01476	LysM domain	LysM
UHGV-2046252_45	COG	COG1388	LysM repeat	NA
UHGV-2046252_45	Structural annotation	PF01183, NF007404, COG3757, COG1388	NA	NA
UHGV-2046252_46	PHROG	phrog_881	holin	lysis
UHGV-2046252_46	UniRef90	UniRef90_A0A396BG71	Holin	NA
UHGV-2046252_46	eggNOG-mapper	1680.BADO_1216	Putative phage holin Dp-1	NA
UHGV-2046252_46	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-2046252_46	Structural annotation	PF16938	NA	NA
UHGV-2046252_47	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2046252_47	UniRef90	UniRef90_A0A0H3EA07	Gp28 phagic protein	NA
UHGV-2046252_47	eggNOG-mapper	1680.BADO_1215	Transcriptional regulator	NA
UHGV-2046252_47	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2046252_47	Structural annotation	PF05930, NF033499, COG3311	NA	NA