UHGV-2047242

Genome information

Genome length 31,169 bps

CDS count 45

Completeness 86.74% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-2047242
vOTU ID	vOTU-041609
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029307\|Ga0167511_100201\|provirus_29120_60288
BioSample	SAMEA2737880
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	79
Jumbo phage	No

Genome content
Genome length	31,169 bps
GC content	47.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	95.67%
Average CDS length	665.67 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2047242_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2047242_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2047242_1	UniRef90	UniRef90_UPI0016482ABA	recombinase family protein	NA
UHGV-2047242_1	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-2047242_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2047242_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2047242_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2047242_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2047242_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2047242_2	UniRef90	UniRef90_A0A837RJU7	Exonuclease RNase T and DNA polymerase III	NA
UHGV-2047242_2	eggNOG-mapper	1123359.AUIQ01000036_gene1294	3' exoribonuclease, RNase T-like	NA
UHGV-2047242_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2047242_2	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-2047242_2	Structural annotation	PF00929, MF_00157, NF004844, COG0847	NA	NA
UHGV-2047242_3	PHROG	phrog_87	metallo-protease	other
UHGV-2047242_3	UniRef90	UniRef90_UPI0016459767	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2047242_3	eggNOG-mapper	1123250.KB908434_gene7	Zn peptidase	NA
UHGV-2047242_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2047242_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2047242_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2047242_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2047242_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2047242_4	UniRef90	UniRef90_UPI0008DA878E	XRE family transcriptional regulator	NA
UHGV-2047242_4	eggNOG-mapper	290402.Cbei_0886	transcriptional regulator	NA
UHGV-2047242_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2047242_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2047242_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2047242_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2047242_5	UniRef90	UniRef90_UPI0008D99C31	helix-turn-helix domain-containing protein	NA
UHGV-2047242_5	eggNOG-mapper	1347369.CCAD010000021_gene1566	PFAM helix-turn-helix domain protein	NA
UHGV-2047242_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2047242_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2047242_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2047242_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2047242_6	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2047242_6	UniRef90	UniRef90_G4Q2G9	Bro-N domain-containing protein	NA
UHGV-2047242_6	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-2047242_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2047242_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2047242_6	COG	COG3617	Prophage antirepressor	NA
UHGV-2047242_6	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2047242_7	PHROG	phrog_25045	NA	unknown function
UHGV-2047242_7	UniRef90	UniRef90_F9MMK8	LysM domain protein	NA
UHGV-2047242_7	eggNOG-mapper	568816.Acin_1254	LysM domain	NA
UHGV-2047242_7	Pfam	PF01476	LysM domain	LysM
UHGV-2047242_7	COG	COG1388	LysM repeat	NA
UHGV-2047242_7	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-2047242_9	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2047242_9	UniRef90	UniRef90_S7HTF0	Phage-type endonuclease	NA
UHGV-2047242_9	eggNOG-mapper	1273103.NM10_01174	YqaJ viral recombinase family protein	NA
UHGV-2047242_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2047242_9	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2047242_9	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2047242_9	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2047242_10	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2047242_10	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2047242_10	UniRef90	UniRef90_A0A316M5N2	Recombinase RecT	NA
UHGV-2047242_10	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-2047242_10	Pfam	PF03837	RecT family	RecT
UHGV-2047242_10	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2047242_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2047242_10	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2047242_12	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2047242_12	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2047242_12	UniRef90	UniRef90_UPI0003FCA6D4	DnaD domain protein	NA
UHGV-2047242_12	eggNOG-mapper	1273103.NM10_01164	DnaD domain protein	NA
UHGV-2047242_12	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2047242_12	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2047242_12	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2047242_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2047242_13	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2047242_13	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2047242_13	UniRef90	UniRef90_UPI001D07AA17	DnaA/Hda family protein	NA
UHGV-2047242_13	eggNOG-mapper	1111454.HMPREF1250_0279	DNA replication protein	NA
UHGV-2047242_13	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-2047242_13	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2047242_13	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-2047242_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2047242_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2047242_15	UniRef90	UniRef90_D2RN22	Single-stranded DNA-binding protein	NA
UHGV-2047242_15	eggNOG-mapper	591001.Acfer_0039	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2047242_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2047242_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2047242_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2047242_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2047242_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2047242_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2047242_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2047242_19	UniRef90	UniRef90_UPI001D082351	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2047242_19	eggNOG-mapper	272563.CD630_09360	Endodeoxyribonuclease RusA	NA
UHGV-2047242_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2047242_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2047242_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2047242_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2047242_20	UniRef90	UniRef90_A0A346B157	RNA polymerase subunit sigma-70	NA
UHGV-2047242_20	eggNOG-mapper	1111454.HMPREF1250_0269	NA	NA
UHGV-2047242_20	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-2047242_21	PHROG	phrog_11123	NA	unknown function
UHGV-2047242_21	UniRef90	UniRef90_UPI00045EA58D	NA	NA
UHGV-2047242_21	eggNOG-mapper	1401067.HMPREF0872_06375	NA	NA
UHGV-2047242_21	PADLOC	KwaB_00010	NA	Kiwa
UHGV-2047242_21	Pfam	PF16162	Kiwa protein KwaB-like	KwaB
UHGV-2047242_22	PHROG	phrog_11123	NA	unknown function
UHGV-2047242_22	eggNOG-mapper	698758.AXY_02030	NA	NA
UHGV-2047242_22	PADLOC	KwaB_00010	NA	Kiwa
UHGV-2047242_23	PHROG	phrog_7312	NA	unknown function
UHGV-2047242_23	eggNOG-mapper	698758.AXY_02040	NA	NA
UHGV-2047242_23	PADLOC	KwaA_00002	NA	Kiwa
UHGV-2047242_23	Structural annotation	NF041622	NA	NA
UHGV-2047242_24	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2047242_24	UniRef90	UniRef90_A0A8D4UTL0	HNHc domain-containing protein	NA
UHGV-2047242_24	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-2047242_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2047242_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2047242_24	Structural annotation	NF008448	NA	NA
UHGV-2047242_25	PHROG	phrog_1066	NA	unknown function
UHGV-2047242_25	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-2047242_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2047242_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2047242_26	UniRef90	UniRef90_A0A8D4UU77	Terminase	NA
UHGV-2047242_26	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-2047242_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2047242_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2047242_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2047242_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2047242_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-2047242_27	UniRef90	UniRef90_UPI0016454394	phage portal protein	NA
UHGV-2047242_27	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-2047242_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2047242_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2047242_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2047242_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2047242_28	KOfam	K06904	NA	NA
UHGV-2047242_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2047242_28	UniRef90	UniRef90_UPI00164975A0	HK97 family phage prohead protease	NA
UHGV-2047242_28	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-2047242_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2047242_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2047242_28	COG	COG3740	Phage head maturation protease	NA
UHGV-2047242_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2047242_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-2047242_29	UniRef90	UniRef90_UPI001648ED55	phage major capsid protein	NA
UHGV-2047242_29	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-2047242_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2047242_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2047242_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2047242_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2047242_30	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2047242_30	UniRef90	UniRef90_UPI001647B235	head-tail connector protein	NA
UHGV-2047242_30	eggNOG-mapper	935948.KE386495_gene1332	Phage gp6-like head-tail connector protein	NA
UHGV-2047242_30	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2047242_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2047242_30	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2047242_31	PHROG	phrog_25	head closure Hc1	connector
UHGV-2047242_31	UniRef90	UniRef90_UPI001648A1FB	phage head closure protein	NA
UHGV-2047242_31	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-2047242_31	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2047242_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2047242_31	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2047242_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2047242_32	UniRef90	UniRef90_UPI001645C731	HK97 gp10 family phage protein	NA
UHGV-2047242_32	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2047242_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2047242_32	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2047242_33	PHROG	phrog_525	NA	unknown function
UHGV-2047242_33	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-2047242_33	Pfam	PF20765	NA	DUF6838
UHGV-2047242_34	PHROG	phrog_1480	tail sheath	tail
UHGV-2047242_34	UniRef90	UniRef90_UPI0016491346	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-2047242_34	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-2047242_34	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2047242_34	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2047242_34	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2047242_35	PHROG	phrog_365	tail protein	tail
UHGV-2047242_35	UniRef90	UniRef90_UPI001645E4E9	phage tail tube protein	NA
UHGV-2047242_35	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-2047242_35	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2047242_35	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2047242_36	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2047242_36	UniRef90	UniRef90_UPI001645A435	XkdN-like protein	NA
UHGV-2047242_36	eggNOG-mapper	1232428.CAVO010000003_gene1002	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2047242_36	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2047242_36	Structural annotation	PF08890	NA	NA
UHGV-2047242_38	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2047242_38	UniRef90	UniRef90_UPI001645A310	phage tail tape measure protein	NA
UHGV-2047242_38	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-2047242_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2047242_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2047242_38	COG	COG5283	Phage-related tail protein	NA
UHGV-2047242_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2047242_39	PHROG	phrog_5184	NA	unknown function
UHGV-2047242_39	UniRef90	UniRef90_I0GWS0	Phage related protein	NA
UHGV-2047242_39	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-2047242_39	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2047242_39	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-2047242_40	PHROG	phrog_400	tail protein	tail
UHGV-2047242_40	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-2047242_40	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-2047242_40	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2047242_40	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-2047242_41	PHROG	phrog_579	NA	unknown function
UHGV-2047242_41	UniRef90	UniRef90_UPI0016483798	NA	NA
UHGV-2047242_41	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-2047242_41	Pfam	PF10844	NA	DUF2577
UHGV-2047242_41	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-2047242_42	PHROG	phrog_120	baseplate protein	tail
UHGV-2047242_42	UniRef90	UniRef90_UPI001646EAB8	NA	NA
UHGV-2047242_42	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-2047242_42	Pfam	PF10934	NA	DUF2634
UHGV-2047242_42	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2047242_42	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2047242_43	PHROG	phrog_6	baseplate protein	tail
UHGV-2047242_43	UniRef90	UniRef90_UPI0016450683	baseplate J/gp47 family protein	NA
UHGV-2047242_43	eggNOG-mapper	1232428.CAVO010000003_gene996	Baseplate J-like protein	NA
UHGV-2047242_43	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2047242_43	COG	COG3299	NA	NA
UHGV-2047242_43	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2047242_44	PHROG	phrog_521	tail protein	tail
UHGV-2047242_44	UniRef90	UniRef90_A0A848EVX3	NA	NA
UHGV-2047242_44	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-2047242_44	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2047242_44	COG	COG3778	NA	NA
UHGV-2047242_44	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2047242_45	PHROG	phrog_7037	tail fiber protein	tail
UHGV-2047242_45	UniRef90	UniRef90_UPI000486D8B9	phage tail protein	NA
UHGV-2047242_45	eggNOG-mapper	690850.Desaf_3543	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2047242_45	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2047242_45	Structural annotation	PF12571	NA	NA