UHGV-2047310

Genome information

Genome length 40,491 bps

CDS count 74

Completeness 97.64% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-2047310
vOTU ID	vOTU-067578
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029251\|Ga0167475_100535\|provirus_2981_43471
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.85
Jumbo phage	No

Genome content
Genome length	40,491 bps
GC content	51.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	91.29%
Average CDS length	503.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2047310_2	Structural annotation	PF12510	NA	NA
UHGV-2047310_3	PHROG	phrog_20016	NA	unknown function
UHGV-2047310_3	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-2047310_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-2047310_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2047310_4	PHROG	phrog_16490	NA	unknown function
UHGV-2047310_4	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-2047310_5	PHROG	phrog_22984	NA	unknown function
UHGV-2047310_6	PHROG	phrog_21718	NA	unknown function
UHGV-2047310_6	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-2047310_7	PHROG	phrog_3754	NA	unknown function
UHGV-2047310_7	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2047310_8	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-2047310_9	PHROG	phrog_10091	holin	lysis
UHGV-2047310_9	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-2047310_9	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-2047310_9	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2047310_9	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2047310_9	COG	COG5546	NA	NA
UHGV-2047310_9	Structural annotation	COG5546	NA	NA
UHGV-2047310_10	PHROG	phrog_918	NA	unknown function
UHGV-2047310_10	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-2047310_10	eggNOG-mapper	411902.CLOBOL_05677	NA	NA
UHGV-2047310_10	Pfam	PF19791	NA	DUF6275
UHGV-2047310_10	Structural annotation	PF19791	NA	NA
UHGV-2047310_11	PHROG	phrog_937	hemolysin	other
UHGV-2047310_11	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-2047310_12	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2047310_12	PHROG	phrog_894	endolysin	lysis
UHGV-2047310_12	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-2047310_12	eggNOG-mapper	2754.EH55_01340	Peptidase M15	NA
UHGV-2047310_12	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2047310_12	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2047310_12	COG	COG3108	NA	NA
UHGV-2047310_12	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-2047310_16	Structural annotation	PF14686, PF07210, PF21582, TIGR03000, TIGR04183, COG2512	NA	NA
UHGV-2047310_17	PHROG	phrog_9534	head protein	head and packaging
UHGV-2047310_17	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-2047310_18	PHROG	phrog_538	minor tail protein	tail
UHGV-2047310_18	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2047310_18	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-2047310_18	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2047310_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2047310_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2047310_19	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-2047310_19	eggNOG-mapper	536232.CLM_2045	Phage tail protein	NA
UHGV-2047310_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-2047310_19	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2047310_20	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2047310_20	eggNOG-mapper	1111121.HMPREF1247_0787	nuclear chromosome segregation	NA
UHGV-2047310_20	COG	COG5412	Phage-related protein	NA
UHGV-2047310_20	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-2047310_22	PHROG	phrog_18646	NA	unknown function
UHGV-2047310_22	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-2047310_23	PHROG	phrog_885	major tail protein	tail
UHGV-2047310_23	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-2047310_23	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-2047310_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2047310_24	Structural annotation	PF11367	NA	NA
UHGV-2047310_25	PHROG	phrog_17977	NA	unknown function
UHGV-2047310_25	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-2047310_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2047310_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2047310_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-2047310_27	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-2047310_27	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-2047310_27	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2047310_28	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-2047310_28	Structural annotation	PF06810	NA	NA
UHGV-2047310_29	PHROG	phrog_1233	NA	unknown function
UHGV-2047310_29	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-2047310_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2047310_30	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-2047310_30	eggNOG-mapper	1140001.I571_01837	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2047310_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2047310_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2047310_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2047310_31	Structural annotation	PF06442, MF_01194, NF000331, COG4014	NA	NA
UHGV-2047310_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2047310_32	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-2047310_32	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-2047310_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2047310_32	COG	COG2369	NA	NA
UHGV-2047310_32	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-2047310_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-2047310_33	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-2047310_33	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2047310_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2047310_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2047310_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2047310_34	PHROG	phrog_10250	NA	unknown function
UHGV-2047310_34	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-2047310_34	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-2047310_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2047310_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2047310_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-2047310_34	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2047310_35	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-2047310_35	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-2047310_35	Structural annotation	PF13542	NA	NA
UHGV-2047310_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2047310_36	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-2047310_36	eggNOG-mapper	1347392.CCEZ01000015_gene2854	NA	NA
UHGV-2047310_36	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2047310_37	eggNOG-mapper	1280663.ATVR01000009_gene2143	NA	NA
UHGV-2047310_41	Structural annotation	PF10013, NF001638, COG4338	NA	NA
UHGV-2047310_42	PHROG	phrog_24490	NA	unknown function
UHGV-2047310_42	eggNOG-mapper	1232428.CAVO010000067_gene435	NA	NA
UHGV-2047310_47	PHROG	phrog_924	NA	unknown function
UHGV-2047310_47	UniRef90	UniRef90_UPI001583AB0A	NA	NA
UHGV-2047310_47	eggNOG-mapper	411461.DORFOR_01155	NA	NA
UHGV-2047310_47	Pfam	PF04448	NA	DUF551
UHGV-2047310_48	PHROG	phrog_4433	NA	unknown function
UHGV-2047310_48	eggNOG-mapper	445970.ALIPUT_01592	DNA-templated transcription, initiation	NA
UHGV-2047310_48	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2047310_48	Structural annotation	NF007410	NA	NA
UHGV-2047310_50	PHROG	phrog_9804	NA	unknown function
UHGV-2047310_50	UniRef90	UniRef90_A0A3D1LDS2	Inhibitor_G39P domain-containing protein	NA
UHGV-2047310_50	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-2047310_50	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2047310_50	Structural annotation	PF11417	NA	NA
UHGV-2047310_51	PHROG	phrog_16304	NA	unknown function
UHGV-2047310_51	UniRef90	UniRef90_UPI001959E913	NA	NA
UHGV-2047310_51	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-2047310_51	Pfam	PF19808	NA	DUF6291
UHGV-2047310_51	Structural annotation	PF19808	NA	NA
UHGV-2047310_52	PHROG	phrog_4973	NA	unknown function
UHGV-2047310_52	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-2047310_52	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-2047310_52	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-2047310_52	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-2047310_53	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2047310_53	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2047310_53	UniRef90	UniRef90_A0A7G9WF80	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2047310_53	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-2047310_53	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2047310_53	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2047310_53	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2047310_54	PHROG	phrog_1029	NA	unknown function
UHGV-2047310_54	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-2047310_54	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-2047310_54	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2047310_55	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2047310_55	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-2047310_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2047310_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2047310_56	UniRef90	UniRef90_A0A1C5QDM6	Single-stranded DNA-binding protein	NA
UHGV-2047310_56	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-2047310_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2047310_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2047310_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2047310_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2047310_56	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2047310_57	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2047310_57	UniRef90	UniRef90_A0A417UIB3	Phage recombination protein Bet	NA
UHGV-2047310_57	eggNOG-mapper	86416.Clopa_4307	Phage recombination protein Bet	NA
UHGV-2047310_57	Pfam	PF03837	RecT family	RecT
UHGV-2047310_57	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2047310_57	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2047310_57	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2047310_58	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2047310_58	UniRef90	UniRef90_A0A354AUE1	YqaJ domain-containing protein	NA
UHGV-2047310_58	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-2047310_58	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2047310_58	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2047310_58	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2047310_58	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2047310_63	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-2047310_64	UniRef90	UniRef90_A0A396PRZ5	NA	NA
UHGV-2047310_64	Pfam	PF20037	NA	DUF6440
UHGV-2047310_65	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-2047310_67	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-2047310_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2047310_67	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2047310_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2047310_68	UniRef90	UniRef90_A0A2N2CQC6	XRE family transcriptional regulator	NA
UHGV-2047310_68	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-2047310_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2047310_68	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-2047310_69	PHROG	phrog_585	NA	unknown function
UHGV-2047310_69	UniRef90	UniRef90_UPI001F52F0FC	NA	NA
UHGV-2047310_69	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-2047310_69	Pfam	PF10711	NA	DUF2513
UHGV-2047310_69	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-2047310_74	KOfam	K14059	int; integrase	NA
UHGV-2047310_74	PHROG	phrog_1	integrase	integration and excision
UHGV-2047310_74	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-2047310_74	eggNOG-mapper	1121422.AUMW01000024_gene239	Belongs to the 'phage' integrase family	NA
UHGV-2047310_74	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2047310_74	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2047310_74	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA