UHGV-2047436

Genome information

Genome length 37,056 bps

CDS count 50

Completeness 98.10% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-2047436
vOTU ID	vOTU-074496
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029246\|Ga0168681_100308\|provirus_1181_38236
BioSample	SAMEA2737662
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.39
Jumbo phage	No

Genome content
Genome length	37,056 bps
GC content	46.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.63%
Average CDS length	675.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2047436_1	KOfam	K14059	int; integrase	NA
UHGV-2047436_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2047436_1	UniRef90	UniRef90_A0A373N009	Site-specific integrase	NA
UHGV-2047436_1	eggNOG-mapper	33035.JPJF01000071_gene4457	Phage integrase family	NA
UHGV-2047436_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2047436_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2047436_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2047436_2	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-2047436_2	PHROG	phrog_38135	NA	unknown function
UHGV-2047436_2	UniRef90	UniRef90_A0A416ZS49	NA	NA
UHGV-2047436_2	eggNOG-mapper	1280686.AUKE01000005_gene2337	NA	NA
UHGV-2047436_2	Pfam	PF14020	NA	DUF4236
UHGV-2047436_2	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2047436_2	Structural annotation	PF14020	NA	NA
UHGV-2047436_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2047436_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2047436_4	UniRef90	UniRef90_A0A416ZRZ3	XRE family transcriptional regulator	NA
UHGV-2047436_4	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-2047436_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2047436_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2047436_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2047436_6	PHROG	phrog_36464	NA	unknown function
UHGV-2047436_6	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-2047436_9	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2047436_9	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-2047436_9	Structural annotation	PF01446	NA	NA
UHGV-2047436_10	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2047436_10	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2047436_10	UniRef90	UniRef90_A0A373MZB7	RNase H type-1 domain-containing protein	NA
UHGV-2047436_10	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2047436_10	Pfam	PF00075	RNase H	RNase_H
UHGV-2047436_10	COG	COG0328	Ribonuclease HI	NA
UHGV-2047436_10	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2047436_11	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-2047436_12	PHROG	phrog_8470	NA	unknown function
UHGV-2047436_12	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-2047436_12	eggNOG-mapper	1235792.C808_03081	PcfJ-like protein	NA
UHGV-2047436_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2047436_12	Structural annotation	PF14284	NA	NA
UHGV-2047436_13	PHROG	phrog_15077	NA	unknown function
UHGV-2047436_13	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-2047436_13	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-2047436_13	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2047436_14	PHROG	phrog_3502	NA	unknown function
UHGV-2047436_14	UniRef90	UniRef90_A0A373N0F2	Winged helix-turn-helix transcriptional regulator	NA
UHGV-2047436_14	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-2047436_14	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2047436_14	Structural annotation	PF01726, MF_00732, NF041852, COG0640	NA	NA
UHGV-2047436_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2047436_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2047436_15	UniRef90	UniRef90_A0A373N003	Single-stranded DNA-binding protein	NA
UHGV-2047436_15	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-2047436_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2047436_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2047436_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2047436_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2047436_15	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2047436_16	PHROG	phrog_7566	NA	unknown function
UHGV-2047436_16	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-2047436_17	Structural annotation	PF02796, NF040595	NA	NA
UHGV-2047436_19	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2047436_19	UniRef90	UniRef90_D7GWI5	NA	NA
UHGV-2047436_19	eggNOG-mapper	658655.HMPREF0988_02575	NA	NA
UHGV-2047436_21	Structural annotation	PF10627	NA	NA
UHGV-2047436_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2047436_22	UniRef90	UniRef90_A0A373MZQ3	NA	NA
UHGV-2047436_22	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-2047436_22	Pfam	PF07374	NA	DUF1492
UHGV-2047436_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2047436_22	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2047436_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2047436_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2047436_23	UniRef90	UniRef90_A0A373N028	HNH endonuclease	NA
UHGV-2047436_23	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-2047436_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2047436_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2047436_24	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2047436_24	UniRef90	UniRef90_A0A371IJQ7	RNA polymerase subunit sigma-70	NA
UHGV-2047436_24	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-2047436_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2047436_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2047436_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2047436_25	UniRef90	UniRef90_A0A373MZZ0	Terminase large subunit	NA
UHGV-2047436_25	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-2047436_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2047436_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2047436_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2047436_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2047436_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-2047436_26	UniRef90	UniRef90_A0A416ZRW1	Phage portal protein	NA
UHGV-2047436_26	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-2047436_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2047436_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2047436_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2047436_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2047436_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2047436_27	UniRef90	UniRef90_A0A416ZS51	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2047436_27	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-2047436_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2047436_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2047436_27	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-2047436_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-2047436_28	UniRef90	UniRef90_A0A373N0L7	Phage major capsid protein	NA
UHGV-2047436_28	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-2047436_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2047436_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2047436_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2047436_28	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-2047436_29	PHROG	phrog_749	NA	unknown function
UHGV-2047436_30	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-2047436_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2047436_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2047436_31	PHROG	phrog_78	tail terminator	connector
UHGV-2047436_31	Structural annotation	PF05657	NA	NA
UHGV-2047436_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2047436_32	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-2047436_32	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2047436_32	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-2047436_33	PHROG	phrog_88	major tail protein	tail
UHGV-2047436_33	UniRef90	UniRef90_A0A416ZS16	Phage tail protein	NA
UHGV-2047436_33	eggNOG-mapper	1201292.DR75_1633	NA	NA
UHGV-2047436_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2047436_33	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2047436_35	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2047436_35	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2047436_35	UniRef90	UniRef90_A0A373N0I0	Phage tail tape measure protein	NA
UHGV-2047436_35	eggNOG-mapper	411468.CLOSCI_01499	Phage tail tape measure protein, TP901 family	NA
UHGV-2047436_35	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-2047436_35	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2047436_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2047436_36	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-2047436_36	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-2047436_36	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2047436_36	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2047436_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-2047436_36	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2047436_37	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2047436_37	UniRef90	UniRef90_A0A373N0D4	Prophage_tail domain-containing protein	NA
UHGV-2047436_37	eggNOG-mapper	33035.JPJF01000023_gene3230	Phage minor structural protein	NA
UHGV-2047436_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2047436_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2047436_37	COG	COG4926	Phage-related protein	NA
UHGV-2047436_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2047436_38	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-2047436_38	PHROG	phrog_14030	NA	unknown function
UHGV-2047436_38	UniRef90	UniRef90_UPI0013140944	phage tail tip lysozyme	NA
UHGV-2047436_38	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-2047436_38	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-2047436_38	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2047436_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2047436_38	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-2047436_39	PHROG	phrog_24267	NA	unknown function
UHGV-2047436_39	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-2047436_39	eggNOG-mapper	35344.A0A097PAT0_BPT12	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2047436_40	PHROG	phrog_19695	NA	unknown function
UHGV-2047436_40	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-2047436_40	Structural annotation	PF19714	NA	NA
UHGV-2047436_41	PHROG	phrog_11541	NA	unknown function
UHGV-2047436_41	eggNOG-mapper	556261.HMPREF0240_03316	GDSL-like Lipase/Acylhydrolase	NA
UHGV-2047436_42	PHROG	phrog_9428	NA	unknown function
UHGV-2047436_42	UniRef90	UniRef90_A0A2N5P2E7	Serine/threonine protein kinase	NA
UHGV-2047436_42	eggNOG-mapper	411470.RUMGNA_00253	NA	NA
UHGV-2047436_43	UniRef90	UniRef90_UPI0013141798	ribbon-helix-helix protein, CopG family	NA
UHGV-2047436_43	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-2047436_43	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-2047436_46	PHROG	phrog_199	holin	lysis
UHGV-2047436_46	UniRef90	UniRef90_A0A373MZ88	Holin	NA
UHGV-2047436_46	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-2047436_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2047436_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2047436_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2047436_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2047436_47	PHROG	phrog_3088	amidase	lysis
UHGV-2047436_47	UniRef90	UniRef90_A0A416S3E7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2047436_47	eggNOG-mapper	742740.HMPREF9474_01195	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2047436_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2047436_47	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2047436_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2047436_47	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA
UHGV-2047436_49	PHROG	phrog_13890	NA	unknown function
UHGV-2047436_49	UniRef90	UniRef90_A0A1Q9J4Y8	HTH cro/C1-type domain-containing protein	NA
UHGV-2047436_49	eggNOG-mapper	411468.CLOSCI_01452	NA	NA
UHGV-2047436_50	KOfam	K07258	dacC, dacA, dacD; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]	NA
UHGV-2047436_50	PHROG	phrog_5304	peptidase	other
UHGV-2047436_50	UniRef90	UniRef90_A0A174S4G4	D-alanyl-D-alanine carboxypeptidase dacB	NA
UHGV-2047436_50	eggNOG-mapper	756499.Desde_1757	Belongs to the peptidase S11 family	NA
UHGV-2047436_50	Pfam	PF00768	D-alanyl-D-alanine carboxypeptidase	Peptidase_S11
UHGV-2047436_50	COG	COG1686	D-alanyl-D-alanine carboxypeptidase	NA