UHGV-2047844

Genome information

Genome length 39,209 bps

CDS count 61

Completeness 97.24% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-2047844
vOTU ID	vOTU-009595
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029354\|Ga0243832_100756\|provirus_21075_60283
BioSample	SAMN05971539
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	84.78
Jumbo phage	No

Genome content
Genome length	39,209 bps
GC content	39.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.87%
Average CDS length	602.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2047844_1	KOfam	K14059	int; integrase	NA
UHGV-2047844_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2047844_1	UniRef90	UniRef90_A0A1C6FW60	Tyrosine recombinase XerD	NA
UHGV-2047844_1	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2047844_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2047844_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2047844_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2047844_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2047844_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2047844_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2047844_2	UniRef90	UniRef90_A0A1C6FWX3	LexA repressor	NA
UHGV-2047844_2	eggNOG-mapper	1507.HMPREF0262_00168	Peptidase S24-like	NA
UHGV-2047844_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2047844_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2047844_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2047844_2	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-2047844_3	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2047844_3	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-2047844_3	UniRef90	UniRef90_UPI001D007243	helix-turn-helix domain-containing protein	NA
UHGV-2047844_3	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2047844_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2047844_3	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2047844_4	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-2047844_4	UniRef90	UniRef90_UPI00148CD1FB	aspartate ammonia-lyase	NA
UHGV-2047844_4	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-2047844_4	Pfam	PF11195	NA	DUF2829
UHGV-2047844_4	Structural annotation	PF11195	NA	NA
UHGV-2047844_5	PHROG	phrog_750	NA	unknown function
UHGV-2047844_5	eggNOG-mapper	478749.BRYFOR_08527	NA	NA
UHGV-2047844_5	Structural annotation	PF03444, COG5045	NA	NA
UHGV-2047844_7	PHROG	phrog_3240	NA	unknown function
UHGV-2047844_12	UniRef90	UniRef90_A0A1C6FWP6	Helix-turn-helix domain	NA
UHGV-2047844_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2047844_12	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2047844_12	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2047844_15	Structural annotation	PF10922	NA	NA
UHGV-2047844_17	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2047844_17	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-2047844_17	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-2047844_18	PHROG	phrog_1029	NA	unknown function
UHGV-2047844_18	eggNOG-mapper	349161.Dred_1186	NA	NA
UHGV-2047844_18	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2047844_19	Structural annotation	PF09943	NA	NA
UHGV-2047844_20	PHROG	phrog_674	NA	unknown function
UHGV-2047844_20	UniRef90	UniRef90_A0A7X5HYD7	NA	NA
UHGV-2047844_20	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-2047844_20	Pfam	PF07083	NA	DUF1351
UHGV-2047844_20	Structural annotation	PF07083	NA	NA
UHGV-2047844_21	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2047844_21	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2047844_21	UniRef90	UniRef90_UPI001D034282	recombinase RecT	NA
UHGV-2047844_21	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-2047844_21	Pfam	PF03837	RecT family	RecT
UHGV-2047844_21	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2047844_21	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2047844_21	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2047844_22	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2047844_22	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2047844_22	UniRef90	UniRef90_A0A7X8XIL0	MBL fold metallo-hydrolase	NA
UHGV-2047844_22	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2047844_22	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2047844_22	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2047844_22	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-2047844_23	PHROG	phrog_398	NA	unknown function
UHGV-2047844_23	UniRef90	UniRef90_UPI00137A6F13	putative HNHc nuclease	NA
UHGV-2047844_23	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-2047844_23	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-2047844_23	Structural annotation	PF16784	NA	NA
UHGV-2047844_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2047844_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2047844_25	UniRef90	UniRef90_R6M3F2	Single-stranded DNA-binding protein	NA
UHGV-2047844_25	eggNOG-mapper	588581.Cpap_1479	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2047844_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2047844_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2047844_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2047844_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2047844_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2047844_26	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2047844_26	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2047844_26	UniRef90	UniRef90_UPI00137AD09D	NA	NA
UHGV-2047844_26	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-2047844_26	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2047844_26	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2047844_26	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2047844_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2047844_26	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-2047844_27	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2047844_27	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-2047844_27	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-2047844_28	PHROG	phrog_4400	NA	unknown function
UHGV-2047844_28	UniRef90	UniRef90_A8ATU1	Gp53	NA
UHGV-2047844_28	eggNOG-mapper	357809.Cphy_2990	NA	NA
UHGV-2047844_28	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-2047844_28	Structural annotation	PF01743, MF_00957, NF008634, COG0617	NA	NA
UHGV-2047844_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2047844_33	UniRef90	UniRef90_A0A2K9P072	RNA polymerase subunit sigma-24	NA
UHGV-2047844_33	eggNOG-mapper	1347392.CCEZ01000005_gene1225	NA	NA
UHGV-2047844_33	Structural annotation	PF07374	NA	NA
UHGV-2047844_34	PHROG	phrog_21498	NA	unknown function
UHGV-2047844_34	UniRef90	UniRef90_A0A250ETS9	Chromosome partitioning protein ParB	NA
UHGV-2047844_34	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-2047844_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2047844_34	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-2047844_35	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2047844_35	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2047844_35	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-2047844_35	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-2047844_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2047844_35	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2047844_35	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2047844_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2047844_36	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2047844_36	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-2047844_36	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-2047844_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2047844_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2047844_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2047844_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-2047844_36	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2047844_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-2047844_37	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-2047844_37	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2047844_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2047844_37	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2047844_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2047844_38	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2047844_38	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-2047844_38	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-2047844_38	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2047844_38	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2047844_38	COG	COG2369	NA	NA
UHGV-2047844_38	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2047844_40	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2047844_40	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-2047844_40	eggNOG-mapper	1123250.KB908414_gene2104	NA	NA
UHGV-2047844_40	Pfam	PF14265	NA	DUF4355
UHGV-2047844_40	Structural annotation	PF14265	NA	NA
UHGV-2047844_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-2047844_41	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2047844_41	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-2047844_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2047844_41	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2047844_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2047844_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2047844_41	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2047844_42	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2047844_42	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-2047844_42	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-2047844_42	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2047844_42	Structural annotation	PF05135	NA	NA
UHGV-2047844_43	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-2047844_43	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2047844_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2047844_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2047844_44	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-2047844_44	eggNOG-mapper	1118063.I7ILS4_9CAUD	exonuclease activity	NA
UHGV-2047844_44	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2047844_44	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2047844_44	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2047844_45	PHROG	phrog_78	tail terminator	connector
UHGV-2047844_45	Structural annotation	PF05657	NA	NA
UHGV-2047844_46	PHROG	phrog_88	major tail protein	tail
UHGV-2047844_46	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-2047844_46	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-2047844_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2047844_46	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2047844_49	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-2047844_49	PHROG	phrog_17321	NA	unknown function
UHGV-2047844_49	UniRef90	UniRef90_A0A416CW06	Phage tail tape measure protein	NA
UHGV-2047844_49	eggNOG-mapper	536232.CLM_2046	phage tail tape measure protein	NA
UHGV-2047844_49	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2047844_49	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2047844_49	COG	COG1340	NA	NA
UHGV-2047844_49	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2047844_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2047844_50	UniRef90	UniRef90_R6NBX8	Phage-related protein	NA
UHGV-2047844_50	eggNOG-mapper	86416.Clopa_3365	PFAM Phage tail protein	NA
UHGV-2047844_50	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2047844_50	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2047844_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-2047844_50	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-2047844_51	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2047844_51	UniRef90	UniRef90_R6MM87	Phage minor structural protein	NA
UHGV-2047844_51	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-2047844_51	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-2047844_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2047844_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2047844_51	COG	COG4926	Phage-related protein	NA
UHGV-2047844_51	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-2047844_52	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-2047844_53	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2047844_53	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2047844_53	UniRef90	UniRef90_A0A1E3C3U2	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-2047844_53	eggNOG-mapper	592031.GCWU000322_00749	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2047844_53	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2047844_53	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2047844_54	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2047844_54	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2047844_54	UniRef90	UniRef90_R9KUT1	HicB-like domain-containing protein	NA
UHGV-2047844_54	eggNOG-mapper	397288.C806_02660	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2047844_54	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2047844_54	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2047844_54	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2047844_55	eggNOG-mapper	1120998.AUFC01000016_gene5	alginic acid biosynthetic process	NA
UHGV-2047844_55	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-2047844_55	COG	COG1511	NA	NA
UHGV-2047844_57	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2047844_57	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2047844_58	PHROG	phrog_937	hemolysin	other
UHGV-2047844_58	eggNOG-mapper	693746.OBV_19000	NA	NA
UHGV-2047844_59	PHROG	phrog_443	holin	lysis
UHGV-2047844_59	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-2047844_59	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-2047844_59	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2047844_59	Structural annotation	PF16945	NA	NA
UHGV-2047844_60	PHROG	phrog_918	NA	unknown function
UHGV-2047844_60	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-2047844_60	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-2047844_60	Pfam	PF19791	NA	DUF6275
UHGV-2047844_60	Structural annotation	PF19791	NA	NA
UHGV-2047844_61	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2047844_61	PHROG	phrog_435	endolysin	lysis
UHGV-2047844_61	UniRef90	UniRef90_A0A1C6E2B1	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2047844_61	eggNOG-mapper	272563.CD630_09720	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2047844_61	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2047844_61	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2047844_61	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA