UHGV-2048100

Genome information

Genome length 38,197 bps

CDS count 51

Completeness 98.48% (high-quality)

geNomad score 0.9636

Prediction confidence Confident

Genome information
Genome ID	UHGV-2048100
vOTU ID	vOTU-008211
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029336\|Ga0243752_100055\|provirus_67279_105475
BioSample	SAMN05971455
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.48% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9636
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.04
Jumbo phage	No

Genome content
Genome length	38,197 bps
GC content	40.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	87.28%
Average CDS length	656.88 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2048100_1	KOfam	K14059	int; integrase	NA
UHGV-2048100_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2048100_1	UniRef90	UniRef90_A0A416GYP7	Site-specific integrase	NA
UHGV-2048100_1	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-2048100_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2048100_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2048100_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2048100_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2048100_2	KOfam	K03763	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	NA
UHGV-2048100_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2048100_2	UniRef90	UniRef90_A0A4Q5EM50	Exonuclease	NA
UHGV-2048100_2	eggNOG-mapper	545694.TREPR_3623	EXOIII	NA
UHGV-2048100_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2048100_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2048100_2	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-2048100_2	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2048100_2	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-2048100_2	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-2048100_4	PHROG	phrog_87	metallo-protease	other
UHGV-2048100_4	UniRef90	UniRef90_UPI001D02322C	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2048100_4	eggNOG-mapper	1235792.C808_05259	Zn peptidase	NA
UHGV-2048100_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2048100_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2048100_5	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2048100_5	UniRef90	UniRef90_A0A416GYD3	XRE family transcriptional regulator	NA
UHGV-2048100_5	eggNOG-mapper	742735.HMPREF9467_01804	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2048100_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2048100_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2048100_6	UniRef90	UniRef90_A0A416GY85	XRE family transcriptional regulator	NA
UHGV-2048100_6	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-2048100_6	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-2048100_7	UniRef90	UniRef90_UPI001D0976C2	actin family protein	NA
UHGV-2048100_8	Structural annotation	PF13835, COG5045	NA	NA
UHGV-2048100_9	COG	COG0675	Transposase	NA
UHGV-2048100_10	PHROG	phrog_6058	NA	unknown function
UHGV-2048100_10	UniRef90	UniRef90_A0A3A9SV11	DNA-binding protein	NA
UHGV-2048100_10	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-2048100_10	Structural annotation	PF12728, NF033787	NA	NA
UHGV-2048100_12	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2048100_12	UniRef90	UniRef90_A0A4Q5EM79	NA	NA
UHGV-2048100_12	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-2048100_12	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2048100_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2048100_12	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-2048100_14	PHROG	phrog_4601	NA	unknown function
UHGV-2048100_14	Structural annotation	PF17888	NA	NA
UHGV-2048100_15	PHROG	phrog_15077	NA	unknown function
UHGV-2048100_15	UniRef90	UniRef90_UPI0015702E36	ParB N-terminal domain-containing protein	NA
UHGV-2048100_15	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-2048100_15	Structural annotation	NF038070	NA	NA
UHGV-2048100_16	PHROG	phrog_7566	NA	unknown function
UHGV-2048100_16	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-2048100_18	UniRef90	UniRef90_A0A8E3N0X2	Zinc ribbon domain-containing protein	NA
UHGV-2048100_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2048100_20	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-2048100_20	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-2048100_20	Structural annotation	PF04545	NA	NA
UHGV-2048100_21	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2048100_21	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2048100_21	UniRef90	UniRef90_A0A4Q5EPF1	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2048100_21	eggNOG-mapper	665950.HMPREF1025_02512	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2048100_21	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2048100_22	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2048100_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2048100_22	UniRef90	UniRef90_A0A4V1YJW2	XRE family transcriptional regulator	NA
UHGV-2048100_22	eggNOG-mapper	1280694.AUJQ01000012_gene1844	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2048100_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2048100_22	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2048100_22	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-2048100_23	PHROG	phrog_1914	NA	unknown function
UHGV-2048100_23	UniRef90	UniRef90_A0A4Q5EPK2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2048100_23	eggNOG-mapper	1280694.AUJQ01000012_gene1843	NA	NA
UHGV-2048100_23	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2048100_23	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2048100_23	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2048100_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2048100_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2048100_25	UniRef90	UniRef90_A0A416GYN0	HNH endonuclease	NA
UHGV-2048100_25	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-2048100_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2048100_26	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-2048100_26	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-2048100_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2048100_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2048100_27	UniRef90	UniRef90_A0A416BND4	Terminase	NA
UHGV-2048100_27	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-2048100_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2048100_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2048100_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2048100_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2048100_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-2048100_28	UniRef90	UniRef90_A0A4Q5EPG9	Phage portal protein	NA
UHGV-2048100_28	eggNOG-mapper	1414720.CBYM010000001_gene697	Phage portal protein, HK97 family	NA
UHGV-2048100_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2048100_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2048100_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2048100_28	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2048100_29	KOfam	K06904	NA	NA
UHGV-2048100_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2048100_29	UniRef90	UniRef90_A0A416BNG9	HK97 family phage prohead protease	NA
UHGV-2048100_29	eggNOG-mapper	397288.C806_00074	Phage prohead protease, HK97 family	NA
UHGV-2048100_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2048100_29	COG	COG3740	Phage head maturation protease	NA
UHGV-2048100_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-2048100_30	UniRef90	UniRef90_A0A4V1YJV8	Phage major capsid protein	NA
UHGV-2048100_30	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-2048100_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2048100_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2048100_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2048100_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2048100_31	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2048100_31	UniRef90	UniRef90_A0A4Q5EPF0	Phage gp6-like head-tail connector protein	NA
UHGV-2048100_31	eggNOG-mapper	1304866.K413DRAFT_1227	Phage gp6-like head-tail connector protein	NA
UHGV-2048100_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2048100_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2048100_32	PHROG	phrog_25	head closure Hc1	connector
UHGV-2048100_32	UniRef90	UniRef90_A0A416BNI7	Head-tail adaptor protein	NA
UHGV-2048100_32	eggNOG-mapper	1408428.JNJP01000182_gene2411	Phage head-tail joining protein	NA
UHGV-2048100_32	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2048100_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2048100_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2048100_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2048100_33	UniRef90	UniRef90_UPI001D094E82	HK97 gp10 family phage protein	NA
UHGV-2048100_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2048100_33	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-2048100_34	PHROG	phrog_525	NA	unknown function
UHGV-2048100_34	eggNOG-mapper	397288.C806_00069	NA	NA
UHGV-2048100_34	Pfam	PF20765	NA	DUF6838
UHGV-2048100_34	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-2048100_35	PHROG	phrog_1480	tail sheath	tail
UHGV-2048100_35	UniRef90	UniRef90_A0A4Q5EPI2	Phage tail sheath protein	NA
UHGV-2048100_35	eggNOG-mapper	1408324.JNJK01000006_gene1387	Phage tail sheath C-terminal domain	NA
UHGV-2048100_35	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2048100_35	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2048100_35	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2048100_36	PHROG	phrog_365	tail protein	tail
UHGV-2048100_36	UniRef90	UniRef90_A0A4Q5EPL7	Phage portal protein	NA
UHGV-2048100_36	eggNOG-mapper	1408324.JNJK01000006_gene1388	Phage tail tube protein	NA
UHGV-2048100_36	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2048100_36	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2048100_37	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2048100_37	UniRef90	UniRef90_D4MVP5	Phage XkdN-like protein	NA
UHGV-2048100_37	eggNOG-mapper	1408324.JNJK01000006_gene1389	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2048100_37	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2048100_37	Structural annotation	PF08890	NA	NA
UHGV-2048100_38	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2048100_38	UniRef90	UniRef90_A0A4Q5EPH8	PhageMin_Tail domain-containing protein	NA
UHGV-2048100_38	eggNOG-mapper	398512.JQKC01000009_gene461	tail tape measure protein, TP901	NA
UHGV-2048100_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2048100_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2048100_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2048100_39	PHROG	phrog_380	endolysin	lysis
UHGV-2048100_39	UniRef90	UniRef90_A0A4Q5EPF9	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2048100_39	eggNOG-mapper	500633.CLOHIR_01461	LysM domain protein	NA
UHGV-2048100_39	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2048100_39	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-2048100_40	PHROG	phrog_400	tail protein	tail
UHGV-2048100_40	UniRef90	UniRef90_A0A4V1YJV9	CHAP domain-containing protein	NA
UHGV-2048100_40	eggNOG-mapper	1408324.JNJK01000006_gene1393	NLP P60 protein	NA
UHGV-2048100_40	Pfam	PF05257	CHAP domain	CHAP
UHGV-2048100_40	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2048100_40	Structural annotation	PF14594, PF01551, NF033848, NF040883, COG4379	NA	NA
UHGV-2048100_41	UniRef90	UniRef90_UPI001D0694F4	NA	NA
UHGV-2048100_42	PHROG	phrog_120	baseplate protein	tail
UHGV-2048100_42	UniRef90	UniRef90_A0A4Q5EPQ4	NA	NA
UHGV-2048100_42	eggNOG-mapper	1095750.HMPREF9970_2281	NA	NA
UHGV-2048100_42	Pfam	PF10934	NA	DUF2634
UHGV-2048100_42	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2048100_42	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2048100_43	PHROG	phrog_1608	tail protein	tail
UHGV-2048100_43	UniRef90	UniRef90_A0A4Q5EPG4	Baseplate_J domain-containing protein	NA
UHGV-2048100_43	eggNOG-mapper	1408324.JNJK01000006_gene1396	Baseplate J-like protein	NA
UHGV-2048100_43	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2048100_43	COG	COG3299	NA	NA
UHGV-2048100_43	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2048100_44	PHROG	phrog_521	tail protein	tail
UHGV-2048100_44	UniRef90	UniRef90_A0A4Q5EPM9	NA	NA
UHGV-2048100_44	eggNOG-mapper	1089548.KI783301_gene2598	NA	NA
UHGV-2048100_44	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2048100_44	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2048100_44	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2048100_45	UniRef90	UniRef90_A0A1V0NI99	Prophage BPP	NA
UHGV-2048100_45	eggNOG-mapper	349123.Lreu23DRAFT_3172	NA	NA
UHGV-2048100_48	PHROG	phrog_199	holin	lysis
UHGV-2048100_48	UniRef90	UniRef90_A0A416QWZ9	Holin	NA
UHGV-2048100_48	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-2048100_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2048100_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2048100_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2048100_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2048100_49	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2048100_49	PHROG	phrog_670	endolysin	lysis
UHGV-2048100_49	UniRef90	UniRef90_A0A416GY46	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2048100_49	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2048100_49	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-2048100_49	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2048100_49	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2048100_49	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2048100_49	Structural annotation	PF01832, NF008758, NF009354, COG5632, COG4193	NA	NA
UHGV-2048100_50	PHROG	phrog_1129	holin	lysis
UHGV-2048100_50	UniRef90	UniRef90_A0A4R2LIX9	Holin family Hol44 protein (Superfamily V)	NA
UHGV-2048100_50	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2048100_50	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2048100_50	Structural annotation	PF16079	NA	NA
UHGV-2048100_51	KOfam	K01740	metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]	NA
UHGV-2048100_51	UniRef90	UniRef90_A0A174C065	Methionine gamma-lyase	NA
UHGV-2048100_51	eggNOG-mapper	457412.RSAG_01848	O-acetylhomoserine aminocarboxypropyltransferase cysteine synthase	NA
UHGV-2048100_51	Pfam	PF01053	Cys/Met metabolism PLP-dependent enzyme	Cys_Met_Meta_PP
UHGV-2048100_51	NCBIFam	TIGR01326.1	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA
UHGV-2048100_51	COG	COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	NA
UHGV-2048100_51	Structural annotation	PF01053, MF_02056, NF006096, COG0626	NA	NA