UHGV-2048465

Genome information

Genome length 28,860 bps

CDS count 51

Completeness 91.23% (high-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-2048465
vOTU ID	vOTU-062590
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029340\|Ga0243727_1000021\|provirus_45881_74740
BioSample	SAMN05971428
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.1
Jumbo phage	No

Genome content
Genome length	28,860 bps
GC content	39.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.23%
Average CDS length	530.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2048465_1	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2048465_1	PHROG	phrog_2825	polymerase	DNA, RNA and nucleotide metabolism
UHGV-2048465_1	UniRef90	UniRef90_A0A162J5U9	Reverse transcriptase domain-containing protein	NA
UHGV-2048465_1	eggNOG-mapper	980584.AFPB01000170_gene1437	RNA-directed DNA polymerase	NA
UHGV-2048465_1	PADLOC	retron_III-A1	NA	Retron
UHGV-2048465_1	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2048465_2	KOfam	K14059	int; integrase	NA
UHGV-2048465_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2048465_2	UniRef90	UniRef90_UPI000E4C7350	site-specific integrase	NA
UHGV-2048465_2	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2048465_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2048465_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2048465_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2048465_3	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-2048465_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2048465_4	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-2048465_4	UniRef90	UniRef90_A0A373KVP1	XRE family transcriptional regulator	NA
UHGV-2048465_4	eggNOG-mapper	525254.HMPREF0072_0267	DNA-binding helix-turn-helix protein	NA
UHGV-2048465_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2048465_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2048465_4	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2048465_6	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-2048465_7	Structural annotation	COG1862	NA	NA
UHGV-2048465_12	PHROG	phrog_674	NA	unknown function
UHGV-2048465_12	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-2048465_12	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-2048465_12	Pfam	PF07083	NA	DUF1351
UHGV-2048465_12	Structural annotation	PF07083	NA	NA
UHGV-2048465_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2048465_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2048465_13	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-2048465_13	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-2048465_13	Pfam	PF03837	RecT family	RecT
UHGV-2048465_13	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2048465_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2048465_13	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2048465_14	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2048465_14	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2048465_14	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-2048465_14	eggNOG-mapper	1408437.JNJN01000039_gene371	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2048465_14	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2048465_14	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2048465_14	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-2048465_15	PHROG	phrog_398	NA	unknown function
UHGV-2048465_15	UniRef90	UniRef90_UPI000C7B20DA	putative HNHc nuclease	NA
UHGV-2048465_15	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-2048465_15	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-2048465_15	Structural annotation	PF16784	NA	NA
UHGV-2048465_16	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2048465_16	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-2048465_16	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-2048465_16	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2048465_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2048465_16	Structural annotation	PF14297	NA	NA
UHGV-2048465_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2048465_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2048465_17	UniRef90	UniRef90_A0A374UPV4	Bac_DnaA domain-containing protein	NA
UHGV-2048465_17	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-2048465_17	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-2048465_17	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2048465_17	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-2048465_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2048465_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2048465_18	UniRef90	UniRef90_A0A374US90	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2048465_18	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-2048465_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2048465_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2048465_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2048465_19	Structural annotation	PF08141, MF_00667, TIGR02861, COG0231	NA	NA
UHGV-2048465_20	Structural annotation	PF02796, NF008548	NA	NA
UHGV-2048465_21	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2048465_21	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-2048465_21	eggNOG-mapper	756499.Desde_1065	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-2048465_21	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-2048465_21	Structural annotation	PF11112, NF040595	NA	NA
UHGV-2048465_22	PHROG	phrog_25754	NA	unknown function
UHGV-2048465_22	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-2048465_22	Structural annotation	PF10842, MF_00436, TIGR02383	NA	NA
UHGV-2048465_23	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2048465_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2048465_23	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2048465_28	eggNOG-mapper	1035196.HMPREF9998_01748	methyltransferase	NA
UHGV-2048465_28	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-2048465_29	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2048465_29	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-2048465_29	eggNOG-mapper	926561.KB900623_gene754	NA	NA
UHGV-2048465_29	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-2048465_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2048465_32	UniRef90	UniRef90_A0A412LC59	XRE family transcriptional regulator	NA
UHGV-2048465_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2048465_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2048465_32	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-2048465_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2048465_33	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-2048465_33	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-2048465_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2048465_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2048465_34	PHROG	phrog_1066	NA	unknown function
UHGV-2048465_34	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-2048465_34	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-2048465_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2048465_35	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-2048465_35	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-2048465_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2048465_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2048465_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2048465_35	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2048465_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-2048465_36	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-2048465_36	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-2048465_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2048465_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2048465_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2048465_37	PHROG	phrog_21498	NA	unknown function
UHGV-2048465_37	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-2048465_37	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-2048465_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2048465_37	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-2048465_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2048465_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2048465_38	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2048465_38	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-2048465_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2048465_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2048465_38	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2048465_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-2048465_39	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-2048465_39	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-2048465_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2048465_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2048465_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2048465_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2048465_40	PHROG	phrog_5223	neck protein	connector
UHGV-2048465_40	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-2048465_40	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2048465_40	Structural annotation	TIGR01560	NA	NA
UHGV-2048465_41	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2048465_41	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-2048465_41	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-2048465_41	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2048465_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2048465_42	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-2048465_42	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-2048465_42	Structural annotation	TIGR01725	NA	NA
UHGV-2048465_43	Structural annotation	PF12691	NA	NA
UHGV-2048465_44	PHROG	phrog_885	major tail protein	tail
UHGV-2048465_44	UniRef90	UniRef90_A0A101Y2E4	Big_5 domain-containing protein	NA
UHGV-2048465_44	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-2048465_44	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2048465_45	eggNOG-mapper	272562.CA_C0058	NA	NA
UHGV-2048465_47	PHROG	phrog_23464	NA	unknown function
UHGV-2048465_47	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-2048465_47	COG	COG5283	Phage-related tail protein	NA
UHGV-2048465_47	Structural annotation	COG3941	NA	NA
UHGV-2048465_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2048465_48	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-2048465_48	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-2048465_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-2048465_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2048465_49	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2048465_49	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-2048465_49	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2048465_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2048465_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2048465_49	COG	COG4926	Phage-related protein	NA
UHGV-2048465_49	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2048465_50	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-2048465_50	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2048465_50	Structural annotation	PF10651, PF00541, NF040788	NA	NA