UHGV-2049852

Genome information

Genome length 38,468 bps

CDS count 57

Completeness 96.53% (high-quality)

geNomad score 0.9596

Prediction confidence Confident

Genome information
Genome ID	UHGV-2049852
vOTU ID	vOTU-014422
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029231\|Ga0168725_100233\|provirus_21_38488
BioSample	SAMEA2737706
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.53% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9596
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.68
Jumbo phage	No

Genome content
Genome length	38,468 bps
GC content	54.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.87%
Average CDS length	610.63 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2049852_1	KOfam	K00086	dhaT; 1,3-propanediol dehydrogenase [EC:1.1.1.202]	NA
UHGV-2049852_1	PHROG	phrog_6731	NA	unknown function
UHGV-2049852_1	UniRef90	UniRef90_R5HVV3	Alcohol dehydrogenase	NA
UHGV-2049852_1	eggNOG-mapper	1121344.JHZO01000003_gene1006	alcohol dehydrogenase	NA
UHGV-2049852_1	Pfam	PF00465	Iron-containing alcohol dehydrogenase	Fe-ADH
UHGV-2049852_1	COG	COG1454	Alcohol dehydrogenase, class IV	NA
UHGV-2049852_1	Structural annotation	PF00465, MF_00497_A, TIGR02638, COG1454	NA	NA
UHGV-2049852_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2049852_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-2049852_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2049852_8	PHROG	phrog_7698	endolysin	lysis
UHGV-2049852_8	UniRef90	UniRef90_R5HQL6	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2049852_8	eggNOG-mapper	1519439.JPJG01000059_gene1952	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2049852_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2049852_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2049852_8	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-2049852_10	PHROG	phrog_443	holin	lysis
UHGV-2049852_10	UniRef90	UniRef90_UPI00137A08C5	holin	NA
UHGV-2049852_10	eggNOG-mapper	397288.C806_00114	Putative lactococcus lactis phage r1t holin	NA
UHGV-2049852_10	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2049852_10	Structural annotation	PF16945	NA	NA
UHGV-2049852_11	PHROG	phrog_937	hemolysin	other
UHGV-2049852_11	eggNOG-mapper	445972.ANACOL_01873	NA	NA
UHGV-2049852_14	eggNOG-mapper	293826.Amet_2432	NA	NA
UHGV-2049852_15	PHROG	phrog_521	tail protein	tail
UHGV-2049852_15	UniRef90	UniRef90_UPI001C0DB562	NA	NA
UHGV-2049852_15	eggNOG-mapper	1120998.AUFC01000013_gene2954	NA	NA
UHGV-2049852_15	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2049852_15	COG	COG3778	NA	NA
UHGV-2049852_15	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2049852_16	PHROG	phrog_6	baseplate protein	tail
UHGV-2049852_16	UniRef90	UniRef90_R6PWP6	Baseplate J family protein	NA
UHGV-2049852_16	eggNOG-mapper	1123239.KB898628_gene3248	Baseplate J-like protein	NA
UHGV-2049852_16	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2049852_16	COG	COG3299	NA	NA
UHGV-2049852_16	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2049852_17	UniRef90	UniRef90_UPI000C069116	NA	NA
UHGV-2049852_17	Pfam	PF10934	NA	DUF2634
UHGV-2049852_17	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2049852_18	Structural annotation	PF10844, MF_00403_A, NF003254	NA	NA
UHGV-2049852_19	PHROG	phrog_400	tail protein	tail
UHGV-2049852_19	eggNOG-mapper	875454.BAEW01000002_gene463	PFAM Phage late control gene D protein (GPD)	NA
UHGV-2049852_19	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2049852_19	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-2049852_20	PHROG	phrog_30550	NA	unknown function
UHGV-2049852_20	eggNOG-mapper	293826.Amet_2426	LysM domain	NA
UHGV-2049852_20	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2049852_20	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-2049852_21	PHROG	phrog_7972	NA	unknown function
UHGV-2049852_21	UniRef90	UniRef90_R7I2J6	TMP repeat protein	NA
UHGV-2049852_21	eggNOG-mapper	293826.Amet_2425	phage tail tape measure protein	NA
UHGV-2049852_21	COG	COG5412	Phage-related protein	NA
UHGV-2049852_21	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2049852_22	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-2049852_22	UniRef90	UniRef90_A0A162J0C0	Phage portal protein	NA
UHGV-2049852_22	eggNOG-mapper	393480.FNP_1695	NA	NA
UHGV-2049852_22	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2049852_22	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-2049852_23	PHROG	phrog_365	tail protein	tail
UHGV-2049852_23	UniRef90	UniRef90_R5BEH1	PBSX prophage	NA
UHGV-2049852_23	eggNOG-mapper	393480.FNP_1694	Phage tail tube protein	NA
UHGV-2049852_23	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2049852_23	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2049852_24	PHROG	phrog_1480	tail sheath	tail
UHGV-2049852_24	UniRef90	UniRef90_UPI001C106E57	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-2049852_24	eggNOG-mapper	293826.Amet_2420	Phage tail sheath C-terminal domain	NA
UHGV-2049852_24	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2049852_24	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2049852_25	PHROG	phrog_525	NA	unknown function
UHGV-2049852_25	Pfam	PF20765	NA	DUF6838
UHGV-2049852_25	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-2049852_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2049852_26	UniRef90	UniRef90_UPI001AD62DFB	HK97 gp10 family phage protein	NA
UHGV-2049852_26	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2049852_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2049852_26	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2049852_27	PHROG	phrog_25	head closure Hc1	connector
UHGV-2049852_27	UniRef90	UniRef90_A0A641X786	Phage head closure protein	NA
UHGV-2049852_27	eggNOG-mapper	318464.IO99_13740	Phage head-tail adaptor	NA
UHGV-2049852_27	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2049852_27	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2049852_27	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2049852_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2049852_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-2049852_28	UniRef90	UniRef90_UPI001BB4749F	phage major capsid protein	NA
UHGV-2049852_28	eggNOG-mapper	441768.ACL_0612	Phage capsid family	NA
UHGV-2049852_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2049852_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2049852_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2049852_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2049852_29	UniRef90	UniRef90_A0A644ZMQ3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2049852_29	eggNOG-mapper	649639.Bcell_2731	Serine dehydrogenase proteinase	NA
UHGV-2049852_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2049852_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2049852_29	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2049852_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-2049852_30	UniRef90	UniRef90_UPI0013EF1526	phage portal protein	NA
UHGV-2049852_30	eggNOG-mapper	693746.OBV_20020	Phage portal protein	NA
UHGV-2049852_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2049852_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2049852_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2049852_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2049852_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2049852_32	UniRef90	UniRef90_A0A3D4EH51	Terminase large subunit	NA
UHGV-2049852_32	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-2049852_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2049852_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2049852_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2049852_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2049852_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2049852_33	UniRef90	UniRef90_UPI0013EF20CD	P27 family phage terminase small subunit	NA
UHGV-2049852_33	eggNOG-mapper	1501230.ET33_02275	Phage terminase, small subunit	NA
UHGV-2049852_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2049852_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2049852_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2049852_34	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2049852_34	UniRef90	UniRef90_A0A8J6J0T2	HNH endonuclease	NA
UHGV-2049852_34	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-2049852_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2049852_34	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2049852_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2049852_35	eggNOG-mapper	1226322.HMPREF1545_00109	NA	NA
UHGV-2049852_35	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2049852_38	PHROG	phrog_799	DNA methyltransferase	other
UHGV-2049852_38	UniRef90	UniRef90_UPI000AAF359D	SAM-dependent DNA methyltransferase	NA
UHGV-2049852_38	eggNOG-mapper	1519439.JPJG01000060_gene1874	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-2049852_38	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2049852_38	Structural annotation	PF05869, MF_01872, NF000058, COG0286	NA	NA
UHGV-2049852_39	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-2049852_39	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-2049852_40	PHROG	phrog_474	phosphofructokinase	other
UHGV-2049852_40	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-2049852_40	eggNOG-mapper	1095750.HMPREF9970_1026	NA	NA
UHGV-2049852_40	Pfam	PF19905	NA	DUF6378
UHGV-2049852_40	Structural annotation	PF19905	NA	NA
UHGV-2049852_42	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2049852_42	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2049852_42	UniRef90	UniRef90_A0A1C6BCB2	DNA helicase	NA
UHGV-2049852_42	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-2049852_42	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2049852_42	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2049852_42	COG	COG0305	Replicative DNA helicase	NA
UHGV-2049852_42	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-2049852_43	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2049852_43	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-2049852_43	eggNOG-mapper	1235835.C814_02333	NA	NA
UHGV-2049852_43	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2049852_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2049852_43	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-2049852_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2049852_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2049852_44	UniRef90	UniRef90_UPI0011C72302	helix-turn-helix domain-containing protein	NA
UHGV-2049852_44	eggNOG-mapper	1226322.HMPREF1545_03603	Helix-turn-helix XRE-family like proteins	NA
UHGV-2049852_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2049852_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2049852_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2049852_45	UniRef90	UniRef90_UPI0011CA7FB5	helix-turn-helix transcriptional regulator	NA
UHGV-2049852_45	eggNOG-mapper	1048834.TC41_1894	sequence-specific DNA binding	NA
UHGV-2049852_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2049852_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2049852_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2049852_52	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2049852_52	UniRef90	UniRef90_A0A810Q5N3	HTH cro/C1-type domain-containing protein	NA
UHGV-2049852_52	eggNOG-mapper	903814.ELI_3237	sequence-specific DNA binding	NA
UHGV-2049852_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2049852_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2049852_52	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-2049852_53	PHROG	phrog_38135	NA	unknown function
UHGV-2049852_53	eggNOG-mapper	861454.HMPREF9099_00996	NA	NA
UHGV-2049852_53	Pfam	PF14020	NA	DUF4236
UHGV-2049852_55	KOfam	K14059	int; integrase	NA
UHGV-2049852_55	PHROG	phrog_1	integrase	integration and excision
UHGV-2049852_55	UniRef90	UniRef90_R5HDB9	Integrase family protein	NA
UHGV-2049852_55	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2049852_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2049852_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2049852_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2049852_55	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2049852_56	PHROG	phrog_13256	NA	unknown function
UHGV-2049852_56	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-2049852_57	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-2049852_57	PHROG	phrog_6320	tail fiber protein	tail
UHGV-2049852_57	UniRef90	UniRef90_UPI0018E9B8E7	collagen-like protein	NA
UHGV-2049852_57	eggNOG-mapper	1226322.HMPREF1545_02052	Membrane	NA
UHGV-2049852_57	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2049852_57	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA