UHGV-2050507

Genome information

Genome length 22,826 bps

CDS count 41

Completeness 55.15% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-2050507
vOTU ID	vOTU-041629
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029245\|Ga0168762_101532
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.88
Jumbo phage	No

Genome content
Genome length	22,826 bps
GC content	50.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	89.31%
Average CDS length	503.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2050507_1	PHROG	phrog_64	portal protein	head and packaging
UHGV-2050507_1	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-2050507_1	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2050507_1	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2050507_1	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2050507_2	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2050507_2	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-2050507_2	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-2050507_2	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-2050507_4	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2050507_4	PHROG	phrog_21498	NA	unknown function
UHGV-2050507_4	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-2050507_4	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-2050507_4	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2050507_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2050507_4	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2050507_4	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-2050507_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2050507_5	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-2050507_5	eggNOG-mapper	1121428.DESHY_10050___1	NA	NA
UHGV-2050507_5	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2050507_6	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2050507_6	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-2050507_6	UniRef90	UniRef90_A0A0E2E9E3	Methyltransferase	NA
UHGV-2050507_6	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-2050507_6	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-2050507_6	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2050507_6	COG	COG0863	DNA modification methylase	NA
UHGV-2050507_6	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-2050507_8	PHROG	phrog_3136	NA	unknown function
UHGV-2050507_8	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-2050507_8	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-2050507_8	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2050507_8	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-2050507_9	UniRef90	UniRef90_UPI001C8BFE2A	Lar family restriction alleviation protein	NA
UHGV-2050507_9	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2050507_9	Structural annotation	PF14354, NF007260	NA	NA
UHGV-2050507_11	PHROG	phrog_21034	NA	unknown function
UHGV-2050507_11	eggNOG-mapper	1221522.B723_18435	NA	NA
UHGV-2050507_12	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2050507_12	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-2050507_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2050507_12	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2050507_13	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2050507_13	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-2050507_13	UniRef90	UniRef90_A0A3D5I9W8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2050507_13	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2050507_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2050507_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2050507_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2050507_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2050507_16	UniRef90	UniRef90_A0A4Z0Y679	DNA replication protein DnaC	NA
UHGV-2050507_16	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-2050507_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2050507_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2050507_16	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-2050507_17	PHROG	phrog_15768	NA	unknown function
UHGV-2050507_17	eggNOG-mapper	679935.Alfi_0671	NA	NA
UHGV-2050507_17	Pfam	PF19808	NA	DUF6291
UHGV-2050507_17	Structural annotation	PF19808	NA	NA
UHGV-2050507_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2050507_18	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2050507_18	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2050507_18	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-2050507_18	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2050507_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2050507_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2050507_19	UniRef90	UniRef90_A0A1E4LK76	Single-stranded DNA-binding protein	NA
UHGV-2050507_19	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-2050507_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2050507_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2050507_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2050507_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2050507_19	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-2050507_20	UniRef90	UniRef90_UPI001D05CADB	HNH endonuclease	NA
UHGV-2050507_20	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-2050507_20	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-2050507_21	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2050507_21	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-2050507_21	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2050507_21	Structural annotation	PF05772	NA	NA
UHGV-2050507_22	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2050507_22	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-2050507_22	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2050507_22	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2050507_23	UniRef90	UniRef90_A0A6N9QJT6	NA	NA
UHGV-2050507_23	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-2050507_23	Pfam	PF06378	NA	DUF1071
UHGV-2050507_23	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-2050507_28	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-2050507_29	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-2050507_33	UniRef90	UniRef90_UPI001C1045C3	helix-turn-helix domain-containing protein	NA
UHGV-2050507_33	eggNOG-mapper	1211817.CCAT010000053_gene2103	Helix-turn-helix	NA
UHGV-2050507_33	Pfam	PF05339	NA	DUF739
UHGV-2050507_33	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-2050507_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2050507_34	UniRef90	UniRef90_A0A3D3W9W9	HTH cro/C1-type domain-containing protein	NA
UHGV-2050507_34	eggNOG-mapper	658659.HMPREF0983_03304	Helix-turn-helix XRE-family like proteins	NA
UHGV-2050507_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2050507_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2050507_34	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-2050507_35	eggNOG-mapper	1410638.JHXJ01000015_gene2445	NA	NA
UHGV-2050507_36	COG	COG1426	NA	NA
UHGV-2050507_36	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2050507_37	KOfam	K14059	int; integrase	NA
UHGV-2050507_37	PHROG	phrog_1	integrase	integration and excision
UHGV-2050507_37	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-2050507_37	eggNOG-mapper	1121344.JHZO01000004_gene1696	Phage integrase family	NA
UHGV-2050507_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2050507_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2050507_37	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2050507_39	Structural annotation	PF12510	NA	NA
UHGV-2050507_40	PHROG	phrog_20016	NA	unknown function
UHGV-2050507_40	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-2050507_40	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-2050507_40	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2050507_41	PHROG	phrog_16490	NA	unknown function
UHGV-2050507_41	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA