UHGV-2051036

Genome information

Genome length 40,557 bps

CDS count 51

Completeness 98.24% (high-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-2051036
vOTU ID	vOTU-008494
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029329\|Ga0242807_100243\|provirus_181_47276
BioSample	SAMN05545054
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.84
Jumbo phage	No

Genome content
Genome length	40,557 bps
GC content	38.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.52%
Average CDS length	747.59 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2051036_1	PHROG	phrog_87	metallo-protease	other
UHGV-2051036_1	UniRef90	UniRef90_A0A173S221	Metallopeptidase immA	NA
UHGV-2051036_1	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-2051036_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2051036_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2051036_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2051036_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2051036_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2051036_2	UniRef90	UniRef90_A0A173S1T7	Transcriptional regulator, y4mF family	NA
UHGV-2051036_2	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-2051036_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2051036_2	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2051036_3	UniRef90	UniRef90_R6SLX6	HTH cro/C1-type domain-containing protein	NA
UHGV-2051036_3	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-2051036_3	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-2051036_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2051036_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2051036_4	UniRef90	UniRef90_R7C3R8	Antirepressor	NA
UHGV-2051036_4	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-2051036_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2051036_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2051036_4	COG	COG3617	Prophage antirepressor	NA
UHGV-2051036_4	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-2051036_5	PHROG	phrog_6058	NA	unknown function
UHGV-2051036_5	UniRef90	UniRef90_A0A1Q2C3Y4	HTH cro/C1-type domain-containing protein	NA
UHGV-2051036_5	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-2051036_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2051036_8	PHROG	phrog_18562	NA	unknown function
UHGV-2051036_8	eggNOG-mapper	717606.PaecuDRAFT_3099	NA	NA
UHGV-2051036_9	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2051036_9	UniRef90	UniRef90_R7MZ29	NA	NA
UHGV-2051036_9	eggNOG-mapper	469618.FVAG_01292	NA	NA
UHGV-2051036_9	Pfam	PF10926	NA	DUF2800
UHGV-2051036_9	COG	COG2887	RecB family exonuclease	NA
UHGV-2051036_9	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2051036_10	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2051036_10	UniRef90	UniRef90_UPI0009F98B20	NA	NA
UHGV-2051036_10	eggNOG-mapper	1449126.JQKL01000006_gene839	NA	NA
UHGV-2051036_10	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2051036_10	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-2051036_11	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2051036_11	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2051036_11	UniRef90	UniRef90_A0A173S361	DNA polymerase I, thermostable	NA
UHGV-2051036_11	eggNOG-mapper	86416.Clopa_0561	DNA polymerase	NA
UHGV-2051036_11	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2051036_11	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2051036_11	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2051036_12	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2051036_12	UniRef90	UniRef90_A0A173S1C5	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2051036_12	eggNOG-mapper	1321778.HMPREF1982_02544	Virulence-associated protein E	NA
UHGV-2051036_12	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2051036_12	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2051036_12	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2051036_13	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2051036_13	UniRef90	UniRef90_A0A173S1G6	VRR-NUC domain	NA
UHGV-2051036_13	eggNOG-mapper	86416.Clopa_0565	VRR-NUC domain-containing protein	NA
UHGV-2051036_13	Structural annotation	PF18741	NA	NA
UHGV-2051036_14	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2051036_14	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2051036_14	UniRef90	UniRef90_A0A173S305	DNA methylase	NA
UHGV-2051036_14	eggNOG-mapper	86416.Clopa_0567	snf2 family	NA
UHGV-2051036_14	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2051036_14	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2051036_14	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2051036_14	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2051036_14	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2051036_15	PHROG	phrog_31515	NA	unknown function
UHGV-2051036_15	Structural annotation	PF07338, NF033776	NA	NA
UHGV-2051036_16	Structural annotation	MF_00773, NF011481, COG2888	NA	NA
UHGV-2051036_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2051036_17	UniRef90	UniRef90_A0A417V855	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2051036_17	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-2051036_17	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2051036_17	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-2051036_18	eggNOG-mapper	1220589.CD32_01770	NA	NA
UHGV-2051036_18	AcrCatalog	cluster_38765	NA	NA
UHGV-2051036_18	Structural annotation	PF15931, NF001462, COG2974	NA	NA
UHGV-2051036_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2051036_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2051036_20	UniRef90	UniRef90_A0A1C5WCW6	Terminase small subunit	NA
UHGV-2051036_20	eggNOG-mapper	641112.ACOK01000073_gene2887	Terminase small subunit	NA
UHGV-2051036_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2051036_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2051036_20	Structural annotation	PF03592	NA	NA
UHGV-2051036_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2051036_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2051036_21	UniRef90	UniRef90_A0A1Q9JQ23	Terminase	NA
UHGV-2051036_21	eggNOG-mapper	476272.RUMHYD_02845	Phage terminase, large subunit, PBSX family	NA
UHGV-2051036_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2051036_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2051036_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2051036_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-2051036_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2051036_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-2051036_22	UniRef90	UniRef90_A0A1Q9JPY8	Phage portal protein	NA
UHGV-2051036_22	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-2051036_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2051036_22	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2051036_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2051036_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2051036_23	UniRef90	UniRef90_UPI001EE0370C	minor capsid protein	NA
UHGV-2051036_23	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2051036_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2051036_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2051036_23	COG	COG2369	NA	NA
UHGV-2051036_23	Structural annotation	PF04233, PF04002, TIGR01641, NF000642, COG2003, COG2369	NA	NA
UHGV-2051036_26	KOfam	K07584	NA	NA
UHGV-2051036_26	PHROG	phrog_4478	peptidase	other
UHGV-2051036_26	UniRef90	UniRef90_A0A1C5WDE4	Predicted ribosomal protein	NA
UHGV-2051036_26	eggNOG-mapper	411470.RUMGNA_03236	Cysteine protease Prp	NA
UHGV-2051036_26	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2051036_26	COG	COG2868	NA	NA
UHGV-2051036_26	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2051036_27	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2051036_27	UniRef90	UniRef90_A0A374APH2	NA	NA
UHGV-2051036_27	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-2051036_27	Pfam	PF14265	NA	DUF4355
UHGV-2051036_27	Structural annotation	PF14265	NA	NA
UHGV-2051036_28	PHROG	phrog_544	major head protein	head and packaging
UHGV-2051036_28	UniRef90	UniRef90_A0A1Q9JVQ7	S-l_SbsC_C domain-containing protein	NA
UHGV-2051036_28	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-2051036_28	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2051036_28	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2051036_29	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-2051036_29	eggNOG-mapper	202752.JL53_03755	NA	NA
UHGV-2051036_30	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2051036_30	UniRef90	UniRef90_UPI001D03FC16	phage head-tail connector protein	NA
UHGV-2051036_30	eggNOG-mapper	1235798.C817_03475	Phage gp6-like head-tail connector protein	NA
UHGV-2051036_30	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2051036_30	Structural annotation	PF05135	NA	NA
UHGV-2051036_31	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2051036_31	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-2051036_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2051036_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2051036_32	UniRef90	UniRef90_UPI001BADC8E2	HK97 gp10 family phage protein	NA
UHGV-2051036_32	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2051036_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2051036_32	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2051036_32	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2051036_33	PHROG	phrog_176	tail terminator	connector
UHGV-2051036_33	UniRef90	UniRef90_UPI001D04E689	NA	NA
UHGV-2051036_33	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-2051036_33	Structural annotation	PF11367	NA	NA
UHGV-2051036_34	PHROG	phrog_238	major tail protein	tail
UHGV-2051036_34	UniRef90	UniRef90_A0A374APJ8	Phage major tail protein, TP901-1 family	NA
UHGV-2051036_34	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-2051036_34	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2051036_34	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2051036_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2051036_35	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2051036_35	UniRef90	UniRef90_UPI001EDE7A75	tail assembly chaperone	NA
UHGV-2051036_35	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-2051036_35	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2051036_35	Structural annotation	PF12363	NA	NA
UHGV-2051036_36	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-2051036_36	eggNOG-mapper	476272.RUMHYD_02862	NA	NA
UHGV-2051036_37	PHROG	phrog_1204	tail protein	tail
UHGV-2051036_37	UniRef90	UniRef90_UPI001EDDAD50	tape measure protein	NA
UHGV-2051036_37	eggNOG-mapper	1302286.BAOT01000008_gene610	phage tail tape measure protein	NA
UHGV-2051036_37	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2051036_37	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2051036_37	COG	COG5283	Phage-related tail protein	NA
UHGV-2051036_38	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2051036_38	UniRef90	UniRef90_UPI001EE13C6C	phage tail family protein	NA
UHGV-2051036_38	eggNOG-mapper	476272.RUMHYD_02864	NA	NA
UHGV-2051036_38	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2051036_38	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2051036_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-2051036_38	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2051036_39	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-2051036_39	UniRef90	UniRef90_UPI001EDFD86A	phage tail protein	NA
UHGV-2051036_39	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-2051036_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2051036_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2051036_39	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2051036_41	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-2051036_42	COG	COG4677	Pectin methylesterase and related acyl-CoA thioesterases	NA
UHGV-2051036_44	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2051036_44	PHROG	phrog_6544	NA	unknown function
UHGV-2051036_44	UniRef90	UniRef90_UPI00156FB367	HNH endonuclease	NA
UHGV-2051036_44	eggNOG-mapper	243277.VC_A0307	HNH nucleases	NA
UHGV-2051036_44	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2051036_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2051036_46	Structural annotation	PF17224, COG3354	NA	NA
UHGV-2051036_48	PHROG	phrog_937	hemolysin	other
UHGV-2051036_48	eggNOG-mapper	478749.BRYFOR_07561	NA	NA
UHGV-2051036_49	eggNOG-mapper	1291050.JAGE01000001_gene794	NA	NA
UHGV-2051036_50	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-2051036_50	PHROG	phrog_7	endolysin	lysis
UHGV-2051036_50	UniRef90	UniRef90_D4MWZ1	Lysozyme	NA
UHGV-2051036_50	eggNOG-mapper	1166130.H650_06900	Phage lysozyme	NA
UHGV-2051036_50	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-2051036_50	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2051036_50	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-2051036_50	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-2051036_51	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-2051036_51	UniRef90	UniRef90_UPI001EDD0FEF	Ig-like domain-containing protein	NA
UHGV-2051036_51	eggNOG-mapper	411463.EUBVEN_01812	COG COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases	NA
UHGV-2051036_51	Pfam	PF00188	Cysteine-rich secretory protein family	CAP
UHGV-2051036_51	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2051036_51	COG	COG1501	Alpha-glucosidase/xylosidase, GH31 family	NA